View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_60 (Length: 260)
Name: NF0775_low_60
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 6013387 - 6013177
Alignment:
| Q |
9 |
caacaatattttaacaatctagcnnnnnnnattctcagactcattgatttttatttgtatgtgtttttgggttcttacaagaaaggccatgaatcaatat |
108 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||| | |||||||||||||| |
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| T |
6013387 |
caacaatattttaacaatctagctttttttattctcagactcatcaatttttatttgtaggtgtttttgggttcttaaaagaatgaccatgaatcaatat |
6013288 |
T |
|
| Q |
109 |
actagatccgtgnnnnnnntaagggtactcgtgaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaatcagtattcaatttg |
208 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
6013287 |
actagatctgtgaaaaaaataagggtactcgtgaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaattgaaaatcagtatttaatttg |
6013188 |
T |
|
| Q |
209 |
atatagttttt |
219 |
Q |
| |
|
||||||||||| |
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|
| T |
6013187 |
atatagttttt |
6013177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 37422812 - 37422595
Alignment:
| Q |
9 |
caacaatattttaacaatctagcnnnnnnnattctcagactcattgatttttatttgtatgtgtttttgggttcttacaagaaaggccatgaatcaatat |
108 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37422812 |
caacaatattttaacaatctagctttttttattctcagactcatcgatttttatttgtatgtgtttttgggttcttacaagaaaggccatgaatcaatat |
37422713 |
T |
|
| Q |
109 |
actagatccgtgnnnnnnntaagggtactcgtgaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaatcagtattcaatttg |
208 |
Q |
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||||||| ||| |||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
37422712 |
actagatttgtg-aaacaataagggtacttgtgaaagggattgacagaaaaatttcatgtcaaactgcaaaa--caaattgaaaatcagtattcaatttg |
37422616 |
T |
|
| Q |
209 |
atatagttttttcacgtcaaa |
229 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
37422615 |
atatagttttttcacgtcaaa |
37422595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 36272315 - 36272371
Alignment:
| Q |
141 |
gaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaatcagt |
198 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
36272315 |
gaaagggattg-gagaccaatttcatgtcaaacagcaaaattcaaattgaaaaccagt |
36272371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 6767886 - 6767937
Alignment:
| Q |
141 |
gaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaa |
193 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
6767886 |
gaaagggattg-gagaccaatttcatgtcaaacagcaaaattcaaattgaaaa |
6767937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 8383798 - 8383855
Alignment:
| Q |
141 |
gaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaatcagt |
198 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||| ||||||||| |||| ||||||||| |
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|
| T |
8383798 |
gaaagggattgaaagatcaattttatgtcaaacagcaaaattcgaattgaaaatcagt |
8383855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 23462685 - 23462629
Alignment:
| Q |
141 |
gaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaatcagt |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||| |||| |||| |
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|
| T |
23462685 |
gaaagggattg-gagaccaatttcatgtcaaatagcaaaattcaaattgaaaaccagt |
23462629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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