View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_61 (Length: 258)
Name: NF0775_low_61
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_61 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 17725188 - 17724944
Alignment:
| Q |
14 |
gacatcatcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
113 |
Q |
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| T |
17725188 |
gacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
17725089 |
T |
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| Q |
114 |
gcacacaatttatctaaaccgggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaata |
213 |
Q |
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| T |
17725088 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaata |
17724989 |
T |
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| Q |
214 |
tggaatggggaaccttgttttggattgcagatgatggcattctat |
258 |
Q |
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| T |
17724988 |
tggaatggggaaccttgttttggattgcagatgatggcattctat |
17724944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 13039793 - 13039549
Alignment:
| Q |
14 |
gacatcatcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
113 |
Q |
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| T |
13039793 |
gacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattttacga |
13039694 |
T |
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| Q |
114 |
gcacacaatttatctaaaccgggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaata |
213 |
Q |
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| T |
13039693 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaata |
13039594 |
T |
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| Q |
214 |
tggaatggggaaccttgttttggattgcagatgatggcattctat |
258 |
Q |
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| T |
13039593 |
tggaatggggaaccttgttttggattacagatgatggcattctat |
13039549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 20705321 - 20705207
Alignment:
| Q |
118 |
acaatttatctaaaccgggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaatatgga |
217 |
Q |
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|||| ||||||||||| ||| ||||||||||||||| ||||| ||||||||| || ||| |||| ||||||||||||| | ||| || || ||||| |
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| T |
20705321 |
acaacttatctaaacctggaaaaagatcatgaacaaaacaagtacttccaaaaacacgtggattaatatgaaacaaaggttctttaggaaataagatgga |
20705222 |
T |
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| Q |
218 |
atggggaaccttgtt |
232 |
Q |
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| T |
20705221 |
gtgaggaactttgtt |
20705207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 11025843 - 11025985
Alignment:
| Q |
14 |
gacatcatcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
113 |
Q |
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||||||| || |||||||||||| ||| || || |||||||||||| ||||||||| | ||||||||||| || |||||||||||||||| ||||||| |
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| T |
11025843 |
gacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaatcgctgagaaagacacatttaactgcacga |
11025942 |
T |
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| Q |
114 |
gcacacaatttatctaaaccgggagtaagatcatgaacaaagc |
156 |
Q |
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| T |
11025943 |
gcaaacattttatctaaaccttgagtaagatcatgaataaagc |
11025985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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