View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_7 (Length: 450)
Name: NF0775_low_7
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 43 - 436
Target Start/End: Original strand, 24699086 - 24699479
Alignment:
| Q |
43 |
aattatcaccaaaacaaaaatgtcaactagttatgtgcaccgttaaatagttatttttgtttatagtcgaaacataaggaaagtttagtgtatctttgtt |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
24699086 |
aattatcaccaaaacaaaaatgtcaactagttatgtgcaccgttaaatagttatttttgtttatagtcgaaacataaggagagtttagtgtacctttgtt |
24699185 |
T |
|
| Q |
143 |
caacttctaaatagcctgtatgatattccttgatcgatgactaccattcaaagtccaaccatacattgatcttttatagaaaacacttatcacatgattc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24699186 |
caacttctaaatagcctgtatgatattccttgatcgatgactaccattcaaaatccaaccatacattgatcttttatagaaaacacttatcacatgattc |
24699285 |
T |
|
| Q |
243 |
tatgttctttcccaatctgttttctttcacaattcctgcttctgctgtattgctaattcgttaaagagtaaagttaagttcttttagagtctaatgaata |
342 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24699286 |
tatgttctttcccaatctgttttctttcacaatttctgcttctactgtattgctaattcagtaaagagtaaagttaagttcttttagagtctaatgaata |
24699385 |
T |
|
| Q |
343 |
ttgactaacctggacctgaaatcaagcactgacctgaacctgactccagccacattctttaaccattcccttaccatctatcatgtttcgcata |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24699386 |
ttgactaacctggacctgaaatcaagcactgacctgaacctgactccagccacattctttaaccattcccttaccatctatcatgtttcgcata |
24699479 |
T |
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