View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_8 (Length: 446)

Name: NF0775_low_8
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_8
NF0775_low_8
[»] chr7 (3 HSPs)
chr7 (30-398)||(8030320-8030688)
chr7 (280-437)||(18000643-18000801)
chr7 (393-437)||(21586143-21586187)
[»] chr3 (2 HSPs)
chr3 (203-437)||(36153418-36153652)
chr3 (243-322)||(3523983-3524062)
[»] chr8 (2 HSPs)
chr8 (280-437)||(16796671-16796829)
chr8 (280-437)||(18207089-18207247)
[»] chr4 (2 HSPs)
chr4 (280-437)||(13103396-13103554)
chr4 (377-437)||(12090398-12090458)
[»] chr6 (1 HSPs)
chr6 (280-437)||(2270190-2270347)
[»] chr5 (1 HSPs)
chr5 (393-437)||(34453198-34453242)
[»] chr1 (2 HSPs)
chr1 (393-437)||(47722445-47722489)
chr1 (393-437)||(47729437-47729481)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 398
Target Start/End: Original strand, 8030320 - 8030688
Alignment:
Q  30 tcagcaacattcagaatggtcctcaatttgcggttttcggtggaagttatggtggagttgttgtcaatatgttgtttttgtgtgggttgaggggaggtag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8030320 tcagcaacattcagaatggtcctcaatttgcggttttcggtggaagttatggtggagttgttgtcaatatgttgtttttgtgtgggttgaggggaggtag 8030419  T
Q  130 agagacatgggttctataaaatgagagagatagaaagagaaaggggtataaagagttttgttagaaagatggatataaagaagagtaaaactcctcatct 229  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8030420 agagatatgggttctataaaatgagagagatagaaagagacaggggtataaagagttttgttagaaagatggatataaagaagagtaaaactcctcgtct 8030519  T
Q  230 gatagaaactaactttgggaaactgcaaacaattgattgcaaattggaataccaaaagactgtggttgtgtgcactacaatcataaatatccattatagt 329  Q
    |||||||||||||||||| |||| ||||||||||||||||| || |||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  8030520 gatagaaactaactttggaaaacggcaaacaattgattgcagatcggaaaaccaaaagattgtggctgtgtgcactacaatcataactatccattatagt 8030619  T
Q  330 aaaatttgaaattcaaaatcagcattaaatggattagggtgagagatttcccactcaggaatctagggt 398  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8030620 gaaatttgaaattcaaaatcagcattaaatggattagggtgagagatttcccactcagtaatctagggt 8030688  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 280 - 437
Target Start/End: Complemental strand, 18000801 - 18000643
Alignment:
Q  280 accaaaagactgtggttgtgtgcactacaatcataaatatccattatagtaaaattt-gaaattcaaaatcagcattaaatggattagggtgagagattt 378  Q
    ||||| ||||||||| ||||| || | ||||||||| |||||| || ||| |||||| ||| || |||||||| ||||||| |||||||||||| || ||    
T  18000801 accaacagactgtggctgtgtacatttcaatcataattatccactaaagttaaatttagaacttaaaaatcagaattaaatagattagggtgagggaatt 18000702  T
Q  379 cccactcaggaatctagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
     |  |||| | || |||| ||||| ||||||||||||||||||||||||||||||||||    
T  18000701 gctgctcaaggatttaggttttagacaaatggagcatgcattgtgaaccttagtattat 18000643  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 21586143 - 21586187
Alignment:
Q  393 tagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||    
T  21586143 tagggtttaggcaaaaggagcatgcattatgaaccttagtattat 21586187  T

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Target: chr3 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 203 - 437
Target Start/End: Complemental strand, 36153652 - 36153418
Alignment:
Q  203 tataaagaagagtaaaactcctcatctgatagaaactaactttgggaaactgcaaacaattgattgcaaattggaataccaaaagactgtggttgtgtgc 302  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||| ||||||||  ||||| |||||||    
T  36153652 tataaataagagtaaaactcctcatctgatagaaaccaactttgggaaacggcaaacaattgattgcagaatggaaaaccaaaagtttgtggctgtgtgc 36153553  T
Q  303 actacaatcataaatatccattatagtaaaatttgaaattcaaaatcagcattaaatggattagggtgagagatttcccactcaggaatctagggtttag 402  Q
    | ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||  ||||||||||    
T  36153552 attacaatcataactatccactatagttaaatttgaaattcaaaatcagcattaaatggattagggtgagagatttcccgcttatgaaaatagggtttag 36153453  T
Q  403 gcaaatggagcatgcattgtgaaccttagtattat 437  Q
    |||||||||||||||||||||||||||||||||||    
T  36153452 gcaaatggagcatgcattgtgaaccttagtattat 36153418  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 3523983 - 3524062
Alignment:
Q  243 tttgggaaactgcaaacaattgattgcaaattggaataccaaaagactgtggttgtgtgcactacaatcataaatatcca 322  Q
    ||||| |||| |||| ||||||| | |  ||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  3523983 tttggaaaacggcaagcaattgaatactgattggaataccaaaacattgtggttgtgtgcaatacaatcataaatatcca 3524062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 437
Target Start/End: Complemental strand, 16796829 - 16796671
Alignment:
Q  280 accaaaagactgtggttgtgtgcactacaatcataaatatccattatagtaaaatttgaaattcaaaa-tcagcattaaatggattagggtgagagattt 378  Q
    |||||||||| |||| |||||||| | ||||||||| |||||| || ||| ||||||| || |||||| |||| ||||||| |||||||||||| || ||    
T  16796829 accaaaagacagtggatgtgtgcatttcaatcataattatccactacagttaaatttggaactcaaaaatcagaattaaatagattagggtgagggaatt 16796730  T
Q  379 cccactcaggaatctagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
     || |||||| || |||| ||||||||||||||||||||||||||||||||||||||||    
T  16796729 gccgctcagggatttaggttttaggcaaatggagcatgcattgtgaaccttagtattat 16796671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 280 - 437
Target Start/End: Complemental strand, 18207247 - 18207089
Alignment:
Q  280 accaaaagactgtggttgtgtgcactacaatcataaatatccattatagtaaaatttgaaattcaaaa-tcagcattaaatggattagggtgagagattt 378  Q
    ||||||||||||| | ||| |||| | ||||||||| |||||| |||||| ||||||| ||||||||| |||| ||||||| |||||||||||| || ||    
T  18207247 accaaaagactgtagctgtctgcatttcaatcataattatccactatagttaaatttggaattcaaaaatcagaattaaatagattagggtgagggaatt 18207148  T
Q  379 cccactcaggaatctagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
    ||| || ||| || |||| |||||||||||||| |||||| ||||||||||||||||||    
T  18207147 cccgctgagggatttaggttttaggcaaatggaacatgcactgtgaaccttagtattat 18207089  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 437
Target Start/End: Original strand, 13103396 - 13103554
Alignment:
Q  280 accaaaagactgtggttgtgtgcactacaatcataaatatccattatagtaaaatttgaaattcaaaa-tcagcattaaatggattagggtgagagattt 378  Q
    ||||||||| ||||| |||||||| | ||||||||| |||||| || | | ||||||| |||| |||| |||| ||||||| |||||||||||  || ||    
T  13103396 accaaaagattgtggctgtgtgcatttcaatcataattatccactacaattaaatttgtaatttaaaaatcagaattaaatagattagggtgaaggaatt 13103495  T
Q  379 cccactcaggaatctagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
     || |||||| || ||||  |||||||||||||||||||||||||||||||||||||||    
T  13103496 gccgctcagggatttaggtgttaggcaaatggagcatgcattgtgaaccttagtattat 13103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 12090398 - 12090458
Alignment:
Q  377 ttcccactcaggaatctagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
    ||||| ||||||||  ||||||||||||||| |||||||||||||||||| ||||||||||    
T  12090398 ttcccgctcaggaagttagggtttaggcaaaaggagcatgcattgtgaactttagtattat 12090458  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 437
Target Start/End: Original strand, 2270190 - 2270347
Alignment:
Q  280 accaaaagactgtggttgtgtgcactacaatcataaatatccattatagtaaaatttgaaattc-aaaatcagcattaaatggattagggtgagagattt 378  Q
    ||||||||||| ||||||| |||| | ||||||||| |||||| |||| | ||||||| ||||| |||||||| ||||||| |||||||||||| || ||    
T  2270190 accaaaagactatggttgtctgcatttcaatcataattatccactata-ttaaatttggaattcaaaaatcagaattaaatagattagggtgagggaatt 2270288  T
Q  379 cccactcaggaatctagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
    ||  || ||| || |||| |||||||||||  || |||||||| |||||||| ||||||    
T  2270289 cctgctgagggatttaggttttaggcaaataaagtatgcattgcgaaccttaatattat 2270347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 34453242 - 34453198
Alignment:
Q  393 tagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  34453242 taggttttagacaaatggagcatgcattgtgaaccttagtattat 34453198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 47722489 - 47722445
Alignment:
Q  393 tagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||    
T  47722489 taggttttaggcaaatgaagcatgcattgtgaacctttgtattat 47722445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 47729481 - 47729437
Alignment:
Q  393 tagggtttaggcaaatggagcatgcattgtgaaccttagtattat 437  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||    
T  47729481 taggttttaggcaaatgaagcatgcattgtgaacctttgtattat 47729437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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