View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_83 (Length: 207)

Name: NF0775_low_83
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_83
NF0775_low_83
[»] chr5 (8 HSPs)
chr5 (1-128)||(1046654-1046781)
chr5 (15-128)||(1053329-1053442)
chr5 (15-128)||(1065686-1065799)
chr5 (10-128)||(1058594-1058712)
chr5 (10-128)||(1071413-1071531)
chr5 (31-121)||(1640775-1640865)
chr5 (15-128)||(1033684-1033797)
chr5 (10-128)||(1044071-1044189)
[»] chr3 (2 HSPs)
chr3 (31-128)||(44171266-44171363)
chr3 (31-128)||(44191562-44191659)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1046781 - 1046654
Alignment:
Q  1 tcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1046781 tcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggt 1046682  T
Q  101 tttcaagagttccaccatattcatctgt 128  Q
    ||||||||||||||||||||||||||||    
T  1046681 tttcaagagttccaccatattcatctgt 1046654  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 1053442 - 1053329
Alignment:
Q  15 aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttcca 114  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  1053442 aaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaagggttcca 1053343  T
Q  115 ccatattcatctgt 128  Q
    ||||||||||||||    
T  1053342 ccatattcatctgt 1053329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 1065799 - 1065686
Alignment:
Q  15 aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttcca 114  Q
    ||||||||||| | |||||||||||||||| || || ||||||||| ||||||||||||||| ||||||| |||||  ||| ||||| || ||||  |||    
T  1065799 aaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgacagcggttctccagagaccca 1065700  T
Q  115 ccatattcatctgt 128  Q
    ||||||||||||||    
T  1065699 ccatattcatctgt 1065686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 1058712 - 1058594
Alignment:
Q  10 tctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagag 109  Q
    |||||||||||||||| | | ||||||  ||| || ||||| ||||||||| ||||||||||||||| |||||||||||    ||||||||| ||||| |    
T  1058712 tctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaaggg 1058613  T
Q  110 ttccaccatattcatctgt 128  Q
     ||||||||||||||||||    
T  1058612 atccaccatattcatctgt 1058594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 1071531 - 1071413
Alignment:
Q  10 tctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagag 109  Q
    |||| ||||||||||| | |||||||||||||||| |  || ||||||||| ||||||||||||||| ||||||| ||||   ||||||||| ||||| |    
T  1071531 tctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaacggttctcaaggg 1071432  T
Q  110 ttccaccatattcatctgt 128  Q
     ||||||||| ||||||||    
T  1071431 atccaccatactcatctgt 1071413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 1640775 - 1640865
Alignment:
Q  31 attccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatatt 121  Q
    |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||| | |||  ||||||||||||||| |||||||| ||||    
T  1640775 attccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaacggttttcaagggttccaccgtatt 1640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 1033797 - 1033684
Alignment:
Q  15 aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttcca 114  Q
    ||||||||||| | | |||||||||||||| || || |||||||| |||||||| ||||||| ||||||  |||||  |||||| || ||||| | ||||    
T  1033797 aaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatcca 1033698  T
Q  115 ccatattcatctgt 128  Q
    ||||||||||||||    
T  1033697 ccatattcatctgt 1033684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 1044189 - 1044071
Alignment:
Q  10 tctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagag 109  Q
    |||| ||||||||||||| | ||||||||| | || || || |||||||| ||||| |||||||||| |||||||  ||||  |||||| || || || |    
T  1044189 tctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctcgaggg 1044090  T
Q  110 ttccaccatattcatctgt 128  Q
     |||||| |||||||||||    
T  1044089 atccaccgtattcatctgt 1044071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 44171266 - 44171363
Alignment:
Q  31 attccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgt 128  Q
    ||||||||| |||| || || |||||||| |||||||||||||||| ||||||  ||||   ||| ||||| || || | ||||||||||||||||||    
T  44171266 attccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatctgt 44171363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 44191562 - 44191659
Alignment:
Q  31 attccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgt 128  Q
    ||||||||| |||| || || |||||||| |||||||||||||||| ||||||  ||||   ||| ||||| || || | ||||||||||||||||||    
T  44191562 attccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatctgt 44191659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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