View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_87 (Length: 202)
Name: NF0775_low_87
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_87 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 51674147 - 51674346
Alignment:
| Q |
3 |
ttggattattcattgccatctcttgatgaggtttgttatgacttatgattatctgttctcgaattttctggtcaatctttgtgcattcaaaacgctaacc |
102 |
Q |
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| T |
51674147 |
ttggattattcattgccatctcttgatgaggtttgttatgacttatgattatctgttctcgaattttctggtcaatctttgtgcattcaaaacgctaacc |
51674246 |
T |
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| Q |
103 |
agtccttgttgaacttatacaacatactgcctaaacgtgaactgctctgacttgtgaaatactcacaaatatatgcactagcctttctattctgggccgg |
202 |
Q |
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| T |
51674247 |
agtccttgttgaacttatacaacatactgcctaaacgtgaactgctctgacttgtgaaatactcacaaatatatgcactagcctttctattctgggccgg |
51674346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 7735823 - 7735985
Alignment:
| Q |
4 |
tggattattcattgccatctcttgatgaggtttgttatgacttatgattatctgttctcgaattttctggtcaatctttgtgcattcaaaacgctaacca |
103 |
Q |
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| T |
7735823 |
tggattattcgctgccatctattgatgaggtttgttatgattaac-----tttgatctcctattttctggtcagcctaggtgcattcaaaatgctaacta |
7735917 |
T |
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| Q |
104 |
gtccttgttgaacttatacaacatactgcctaaacgtgaactgctctgacttgtgaaatactcacaaatat |
174 |
Q |
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| T |
7735918 |
gtccttgttgaacttata-gacacactgcct-aatgtgaactgct-tgacttgtgaaatagtcataaatat |
7735985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 7696729 - 7696617
Alignment:
| Q |
4 |
tggattattcattgccatctcttgatgaggtttgttatgacttatgattatctgttctcgaattttctggtcaatctttgtgcattcaaaacgctaacca |
103 |
Q |
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| T |
7696729 |
tggattattcgctgccatctattgatgaggtttgttatgattaac-----tttgatctcctattttctggtcagcctaggtgcattcaaaatgctaacta |
7696635 |
T |
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| Q |
104 |
gtccttgttgaacttata |
121 |
Q |
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| T |
7696634 |
gtccttgttgaacttata |
7696617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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