View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_9 (Length: 444)
Name: NF0775_low_9
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 93 - 432
Target Start/End: Original strand, 43196594 - 43196933
Alignment:
| Q |
93 |
atcatcatgggaggcgctggacggataaattcaaccatgttgttggcattgtgcacacaaattacttagaatacatcaagagggagaaaaacggggcact |
192 |
Q |
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| T |
43196594 |
atcatcatgggaggcgctggacggataaattcaaccatgttgttggcattgtgcacacaaattacttagaatacatcaagagggagaaaaacggggcact |
43196693 |
T |
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| Q |
193 |
ccaggcgttctttgtgaaacacatcaacaactgggttacaagagcgtactgtgataaggtatgttaattttatatcatggcatttaaggttgaattaact |
292 |
Q |
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| T |
43196694 |
ccaggcgttctttgtgaaacacatcaacaactgggttacaagagcgtactgtgataaggtatgttaattttatatcatggcatttaaggttgaattaact |
43196793 |
T |
|
| Q |
293 |
tgggagataattagatatttagaaatgattactgtgttttggttgataagtttgtcatggatttttattatgaaaagagaactgaacaagacaaaaggga |
392 |
Q |
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| T |
43196794 |
tgggagataattagatatttagaaatgattactgtgttttggttgataagtttgtcatggatttttattatgaaaagagaactgaacaagacaaaaggga |
43196893 |
T |
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| Q |
393 |
ctaaattatttatgatttatattcaggttcttcgtctctc |
432 |
Q |
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| T |
43196894 |
ctaaattatttatgatttatattcaggttcttcgtctctc |
43196933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 25360277 - 25360410
Alignment:
| Q |
110 |
tggacggataaattcaaccatgttgttggcattgtgcacacaaattacttagaatacatcaagagggagaaaaacggggcactccaggcgttctttgtga |
209 |
Q |
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|||||| | |||||||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||| || |||||||||| |
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| T |
25360277 |
tggacgaagaaattcaatcatgttgtcggtattgtccacacaaattatttagaatatatcaagagggagaaaaatggggccctccaagcattctttgtga |
25360376 |
T |
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| Q |
210 |
aacacatcaacaactgggttacaagagcgtactg |
243 |
Q |
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| T |
25360377 |
aacacataaacaactgggttacaagagcgtactg |
25360410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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