View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_high_14 (Length: 325)
Name: NF0777_high_14
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 42 - 317
Target Start/End: Complemental strand, 12994520 - 12994245
Alignment:
| Q |
42 |
ttctcactaatttttactatttgctaaaccaatgttgcttcagttatatgattctaaccatttttatgtaggtggctggtactgaggatggtataaagga |
141 |
Q |
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| T |
12994520 |
ttctcactaatttttactatttgctaaaccaatgttgcttcagttatatgattctaaccatttttatgtaggtggctggtactgaggatggtataaagga |
12994421 |
T |
|
| Q |
142 |
gccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctgcaatgcttgctgaaaagatggagagtcatggt |
241 |
Q |
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| T |
12994420 |
gccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctgcaatgcttgctgaaaagatggagagtcatggt |
12994321 |
T |
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| Q |
242 |
gcaacagggtggcttgttaacactggttggtccggtggcaggtatgcttttagtgcttctctttgcaatattgttg |
317 |
Q |
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| T |
12994320 |
gcaacagggtggcttgttaacactggttggtccggtggcaggtatgcttttagtgcttctctttgcaatattgttg |
12994245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 42 - 317
Target Start/End: Complemental strand, 13069169 - 13068894
Alignment:
| Q |
42 |
ttctcactaatttttactatttgctaaaccaatgttgcttcagttatatgattctaaccatttttatgtaggtggctggtactgaggatggtataaagga |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069169 |
ttctcactaatttttactatttgctaaaccaatgttgcttcagttatatgattctaaccatttttatgtaggtggctggtactgaggatggtataaagga |
13069070 |
T |
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| Q |
142 |
gccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctgcaatgcttgctgaaaagatggagagtcatggt |
241 |
Q |
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| T |
13069069 |
gccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctgcaatgcttgctgaaaagatggagagtcatggt |
13068970 |
T |
|
| Q |
242 |
gcaacagggtggcttgttaacactggttggtccggtggcaggtatgcttttagtgcttctctttgcaatattgttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068969 |
gcaacagggtggcttgttaacactggttggtccggtggcaggtatgcttttagtgcttctctttgcaatattgttg |
13068894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 111 - 288
Target Start/End: Complemental strand, 28136397 - 28136220
Alignment:
| Q |
111 |
aggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctgc |
210 |
Q |
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|||||||||| || || || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||| |||||||||||||| || |
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| T |
28136397 |
aggtggctggcacagaagagggtataaaggagccacaagcaacattttcggcttgttttggagcagcattcataatgctacatcctacaaagtatgcagc |
28136298 |
T |
|
| Q |
211 |
aatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtccggtggcaggtatgc |
288 |
Q |
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| T |
28136297 |
catgcttgctgaaaaaatgcaaaatcatggtgctactggatggcttgttaacactggttggtctggtggaaggtatgc |
28136220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 273
Target Start/End: Complemental strand, 51934111 - 51933948
Alignment:
| Q |
110 |
taggtggctggtactgaggatggtataaaggagccacaagcaacattttctgcttgtttcggtgcagcattcataatgttacaccctacaaagtatgctg |
209 |
Q |
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||||| ||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | || ||||| || |||||| |
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| T |
51934111 |
taggttgctgggacagaagatggtataaaagagccacaagctacattttctgcttgtttcggtgcagcatttataatgatgcatcctaccaaatatgcta |
51934012 |
T |
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| Q |
210 |
caatgcttgctgaaaagatggagagtcatggtgcaacagggtggcttgttaacactggttggtc |
273 |
Q |
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| T |
51934011 |
cgatgctggctgagaagatgcagaagcatggagctactggatggcttgtcaatactggctggtc |
51933948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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