View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_high_2 (Length: 561)
Name: NF0777_high_2
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 29 - 552
Target Start/End: Complemental strand, 5049462 - 5048939
Alignment:
| Q |
29 |
acaaaactctactcttttttctatgtccatattggtccttgatcatatatttgcattcatcacatataagaaaaaattttacaagattaatgatagtata |
128 |
Q |
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| T |
5049462 |
acaaaactctactcttttttctatgtccatattggtccttgatcatatatttgcattcatcacatataagaaaaaaatttacaagattaatgatagtata |
5049363 |
T |
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| Q |
129 |
atgggaaaacaagggtctcctagaagaccaactcctgaatgtaagggtgctgctagaggaatgttaggaatgaataaagattacaagataacaagcaatg |
228 |
Q |
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| T |
5049362 |
atgggaaaacaagggtctcctagaagaccaactcctgaatgtaagggtgctgctagaggaatgttaggaatgaataaagattacaagataacaagcaatg |
5049263 |
T |
|
| Q |
229 |
atccaccttcatggaagaggatgacagcggttgattgtcgttggcattcgaaaactttgttgctacatggtctgaaaaatgattcttcaaagtacaattc |
328 |
Q |
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| T |
5049262 |
atccaccttcatggaagaggatgacagcggttgattgtcgttggcattcgaaaactttgttgctacatggtctgaaaaatgattcttcaaagtacaattc |
5049163 |
T |
|
| Q |
329 |
tattaagggattctatgttggaaaaaagaacattagaactattgttctcatgtttggattgttgggttgtcttttccttcttgattctattttcatctct |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5049162 |
tattaagggattctatgttggaaaaaagaacattagaactattgttctcatgtttggattgttgggttgtcttttccttcttgattctattttcatctct |
5049063 |
T |
|
| Q |
429 |
tttttcgagtttgaaaatattcaaccaagtgcagcagcctcaaatcattcaagtgagcttcaggtataattcagtattccatattattgtaagctatagg |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5049062 |
tttttcgagtttgaaaatattcaaccaagtgcagcagcctcaaatcattcaagtgagcttcaggtataattcagtattccatattattgtaagctatagg |
5048963 |
T |
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| Q |
529 |
tgcatatttcaagcagagtataat |
552 |
Q |
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| T |
5048962 |
tgcatatttcaagcagagtataat |
5048939 |
T |
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