View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_high_20 (Length: 251)
Name: NF0777_high_20
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 4074249 - 4074500
Alignment:
| Q |
1 |
ctttcttatataataattcaaaatataatttggggtccaaattgttcatgaaatacaatattaaaattgttgtcttctactttacattcagttttcctag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4074249 |
ctttcttatataataattcaaaatataatttggggtccaaattgttcatgaaatacaatatcaaaattgttgtcttctactttacattcagttttcctag |
4074348 |
T |
|
| Q |
101 |
atgtgatagttggtg-aaaaaagggagcatctatgcttctaaaaacttcaactttaggtgcttc----------caggaggtaaattaagtctagcaaat |
189 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4074349 |
atgtgatagttggtgaaaaaaagggagcatctatgcttctaaaaacttcaactttaggtgcttcaaagtttggtcaggaggtaaattaagtctagcaaat |
4074448 |
T |
|
| Q |
190 |
gattgttccagttgggatatgaacttctactatcgatttgtcaatctctgtg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4074449 |
gattgttccagttgggatatgaacttctcctatcgatttgtcaatctctgtg |
4074500 |
T |
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