View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_high_21 (Length: 250)
Name: NF0777_high_21
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1882208 - 1882453
Alignment:
| Q |
1 |
ctcaatttaactcatatggagcttaccactgtggacgacgaatannnnnnnnnnnnnnnnngggattggttaaacaaattcgtcttcgcctgcccctctc |
100 |
Q |
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| T |
1882208 |
ctcaatttaactcatatggagcttaccattgtggacgacgaatattcttcttcttcttcttgggattggttaaacaaattcgtctccgcctgcccctctc |
1882307 |
T |
|
| Q |
101 |
ttcactcttgtgattcattataagtattgttagnnnnnnnnnngtttaatcttaatcttaactatagttatttatttatgactgatgatagtcattttga |
200 |
Q |
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| T |
1882308 |
ttcactcttgtgattcattataagtattgttagttttttttttgtttaatcttaatcttaactatagttatttatttatgactgatgatagtcattttga |
1882407 |
T |
|
| Q |
201 |
aattacatttttcatgattgttgagttgtgttgctctgtgctgctc |
246 |
Q |
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| T |
1882408 |
aattacatttttcatgattgttgagttgtgttgctttgtgctgctc |
1882453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 44636446 - 44636362
Alignment:
| Q |
149 |
atcttaatcttaactatagttatttatttatgactgatgatagtcattttgaaattac-atttttcatgattgttgagttgtgttg |
233 |
Q |
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| T |
44636446 |
atcttcatcttaaccctagttatttatttatcactaa-gatagtcattttgaaattactagttttcatgattgttgagttgtgttg |
44636362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 4142152 - 4142235
Alignment:
| Q |
149 |
atcttaatcttaactatagttatttatttatgactgatgatagtcattttgaaatta-catttttcatgattgttgagttgtgttg |
233 |
Q |
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||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||| || |||||||||||||| ||||||||| |
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| T |
4142152 |
atcttaatcttaactatagttttttacttatgactgatg--agtcattttgacattaccagttttcatgattgttaggttgtgttg |
4142235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41542077 - 41542119
Alignment:
| Q |
1 |
ctcaatttaactcatatggagcttaccactgtggacgacgaat |
43 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
41542077 |
ctcaatttaactcatatggagcttaccattgtggaggacgaat |
41542119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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