View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0777_low_1 (Length: 733)

Name: NF0777_low_1
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0777_low_1
NF0777_low_1
[»] chr7 (1 HSPs)
chr7 (53-703)||(38931788-38932423)


Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 53 - 703
Target Start/End: Original strand, 38931788 - 38932423
Alignment:
Q  53 gccttataatactaagacctcctttaacatgtataatttggtgctttctatgttcttcatctggagattgaagctttctaattatactttctttcacttt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  38931788 gccttataatactaagacctcctttaacatgtataatttggtgctttctatgttgttcatcttgagattgaagctttctaattatactttctttcacttt 38931887  T
Q  153 caaaacttgtcccaagaaacgtgaatcaaaaccactgaacatgttgttagtttcttcttctttatcaccacgctttctaccactctgttttactggattc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38931888 caaaacttgtcccaagaaacgtgaatcaaaaccactgaacatgttgttagtttcttcttctttatcaccacgctttcttccactctgttttactggattc 38931987  T
Q  253 ccagctagataaaatctctacatgacatgacatgaatnnnnnnntgaatcatttatatataacaaagttggttgcatttaggagtaattgttagattata 352  Q
    ||||||||||||||||||||||| |||||| || ||        ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38931988 ccagctagataaaatctctacatcacatga-ataaa-----aaatgaatgatttatatataacaaagttggttgcatttaggagtaattgttagattata 38932081  T
Q  353 attaatgttgcttactcttgggatacgatcgagttggtttagtttattggaagtgtcgaggagagtgacaataataagcggggtattgccgtaattgtag 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38932082 attaatgttgcttactcttgggatacgatcgagttggtttagtttattggaagtgtcgaggagagtgacaataataagaggggtattgccgtaattgtag 38932181  T
Q  453 gtccagtaaggaacaccaggtggaatagcaataaggtcaccctgtttcacataacgaaccttctggtgacgatcctgtggttgttgtggccttcctcctt 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38932182 gtccagtaaggaacaccaggtggaatagcaataaggtcaccctgtttcacataacgaaccttctggtgacgatcctgtggttgttgtggccttcctcctt 38932281  T
Q  553 tttcccattgtggctcttcatatgtctctccacatcctggaattgccaatcccaacactcccgttcctgtgtgtacattaattgatgagataaagtactt 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    ||||||||||| ||||||||    
T  38932282 tttcccattgtggctcttcatatgtctctccacatcctggaattgccaatcccaatactcccgttcctgtgtgtac----attgatgagat-aagtactt 38932376  T
Q  653 aacaccaaagagcagtgctttagagatagataagtgaatgaagtaaaaaat 703  Q
    |||||||||||||||||||||||    ||||||||||||||| ||||||||    
T  38932377 aacaccaaagagcagtgctttag----agataagtgaatgaactaaaaaat 38932423  T

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