View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_11 (Length: 428)
Name: NF0777_low_11
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 415
Target Start/End: Complemental strand, 43091600 - 43091215
Alignment:
| Q |
30 |
tttacttcttcttcatttctcttactcttcaagttagctatagaaccattactagatttcatggcctttgaatttgaagtgggtttagtacaannnnnnn |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43091600 |
tttacttcttcttcatttctcttactcttcaagttagctatagaaccattactagatttcatggcctttgaatttgaagtgggtttagcacaattttttt |
43091501 |
T |
|
| Q |
130 |
ggttatgaggaacatattgatgatctttgaagggaatgagtttgccacagaagattatgttgtcatgaattgttgaagtgttgaattcttcactgaaaaa |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091500 |
ggttatgaggaacatattgatgatctttgaagggaatgagtttgccacagaagattatgttgtcatgaattgttgaagtgttgaattcttcactgaaaaa |
43091401 |
T |
|
| Q |
230 |
ctcaaacaagttnnnnnnnnnnnnnnnnnnnnggtgatccttgccataattggaaaaatcacctcgttgaggtgaaattgtggaatttggaaggtcacaa |
329 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43091400 |
ctcaaacaagttatcatcatcatcatcatcatggtgatccttgccataattggaaaaatcaccccgttgaggtgaaattgtggaatttggaaggtcacaa |
43091301 |
T |
|
| Q |
330 |
agtgataaagtttcttcttcttcataatcatcatactcatcttgtagcaaagtactttcttcattccctacttcttcatgtgagta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43091300 |
agtgataaagtttcttcttcttcataatcatcatactcatcttgtagcaaagtactttcttcattccctacttcttgatgtgagta |
43091215 |
T |
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