View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_12 (Length: 421)
Name: NF0777_low_12
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 215 - 421
Target Start/End: Original strand, 41196708 - 41196915
Alignment:
| Q |
215 |
gagttcttatattctcactaattcttttcttcaaattcagtcacnnnnnnnnattacattttctttttctataaaaactcaataataatgtgtgatatag |
314 |
Q |
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| T |
41196708 |
gagttcttatattctcattaattcttttcttcaaattcagtcacttttttttattacattttctttttctataaaaactcaataataatgtgtgatatag |
41196807 |
T |
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| Q |
315 |
cattattttccgtatgaaaaatgtggctttactctcactcttccttccaatgtactatggttctccattatgattttggtcagagttattccctatgat- |
413 |
Q |
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| T |
41196808 |
cattactttccgtatgaaaaatgtggctttactctcactcttccttccaatgtactatggttctccattatgattttggtcagagttattccccatgatc |
41196907 |
T |
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| Q |
414 |
actacact |
421 |
Q |
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| T |
41196908 |
actacact |
41196915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 41196535 - 41196684
Alignment:
| Q |
54 |
agaacatattggaaatatgtctaaagagccatgcagggacaccacggtggacacaaaagaatgtttcattatggtagtgactagtgagtctatgagaaga |
153 |
Q |
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| T |
41196535 |
agaacatattggaaatatgtctaaagagccatgcagggacaccacggtggacacaaaagaatgtttcatcatggtagtgactagtgagtctatgagaaga |
41196634 |
T |
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| Q |
154 |
gccaataaaattgtcagactatgatggtgttcttacctaaaaaatgaagg |
203 |
Q |
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| T |
41196635 |
gccaataaaattgtcagactatgatggtgttcttacctaaaaaatgaagg |
41196684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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