View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_14 (Length: 393)
Name: NF0777_low_14
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 79 - 393
Target Start/End: Original strand, 47010264 - 47010578
Alignment:
| Q |
79 |
gcagaacctgtggatcaggaaaaaagaaataagtttcatgaagatgaagatttgacaattgcagatatgaacagaaagggaaccgtattcacacaccttg |
178 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47010264 |
gcagaatctgtggatcaggaaaaaagaaataagtttcatgaagatgaagatttgacaattgcagatatgaacaaaaagggaaccgtattcacacaccttg |
47010363 |
T |
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| Q |
179 |
catgaagttactgtaccaaactcggagaagagttcgctaagtttttcatcagtgacgctatcatccaagttcttgagatacaagtttgcaccataaaact |
278 |
Q |
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| T |
47010364 |
catgaagttactgtaccaaactcggagaagagttcgctaagtttttcatcagtgacgctatcatccaagttcttgagatacaagtttgcaccataaaact |
47010463 |
T |
|
| Q |
279 |
tgtcaacagtttccttcatactctgctcgtgtctttctttcagctcaagctccctttcatannnnnnnagggcttttccaacataccactccttgtcatc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47010464 |
tgtcaacagtttccttcatactctgctcgtgtctttctttcagctcaagctccctttcatatttttttagggcttttccaacataccactccttgtcatc |
47010563 |
T |
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| Q |
379 |
aaatttctttccatt |
393 |
Q |
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||||||||||||||| |
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| T |
47010564 |
aaatttctttccatt |
47010578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 5710701 - 5710607
Alignment:
| Q |
170 |
cacaccttgcatgaagttactgtaccaaactcggagaagagttcgctaagtttttcatcagtgacgctatcatccaagttcttgagatacaagtt |
264 |
Q |
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||||||||| ||||||| | ||| |||||||||||||| | ||| | |||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
5710701 |
cacaccttgtatgaagtaattgtgccaaactcggagaacatttccttgagtttttcatcagtaatggaatcatccaagttcttgagatacaagtt |
5710607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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