View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0777_low_15 (Length: 386)
Name: NF0777_low_15
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_15 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 42266305 - 42265962
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
42266305 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccagag |
42266206 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266205 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
42266106 |
T |
|
| Q |
211 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266105 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
42266006 |
T |
|
| Q |
311 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266005 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaa |
42265962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 48701736 - 48702079
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48701736 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
48701835 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701836 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
48701935 |
T |
|
| Q |
211 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48701936 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag |
48702035 |
T |
|
| Q |
311 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702036 |
gagaatactaactaacacaaactaggagaaacctcacaggagaa |
48702079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 30950098 - 30950442
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
30950098 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccagag |
30950197 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30950198 |
taacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaa |
30950296 |
T |
|
| Q |
211 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30950297 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaatag |
30950396 |
T |
|
| Q |
311 |
gagaatacaa--actaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
30950397 |
gagaatacaaacactaacactacctaggagaaacctcacaggagaa |
30950442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 94 - 354
Target Start/End: Complemental strand, 42270941 - 42270681
Alignment:
| Q |
94 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270941 |
actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
42270842 |
T |
|
| Q |
194 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270841 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca |
42270742 |
T |
|
| Q |
294 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270741 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
42270681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 102 - 354
Target Start/End: Original strand, 24520031 - 24520283
Alignment:
| Q |
102 |
gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520031 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag |
24520130 |
T |
|
| Q |
202 |
gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24520131 |
gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct |
24520230 |
T |
|
| Q |
302 |
tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520231 |
tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaa |
24520283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 96 - 354
Target Start/End: Original strand, 48697131 - 48697390
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
48697230 |
T |
|
| Q |
196 |
aataaggggaaaa-aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
294 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
48697231 |
aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
48697330 |
T |
|
| Q |
295 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697331 |
tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaa |
48697390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 95 - 354
Target Start/End: Original strand, 30945476 - 30945736
Alignment:
| Q |
95 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945476 |
ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
30945575 |
T |
|
| Q |
195 |
aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
294 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945576 |
aaataaggg-aaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccac |
30945674 |
T |
|
| Q |
295 |
tctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
30945675 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaa |
30945736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 10427597 - 10427348
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10427597 |
tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca |
10427498 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac |
294 |
Q |
| |
|
|||||||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
10427497 |
aataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-c |
10427399 |
T |
|
| Q |
295 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
10427398 |
tctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaa |
10427348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
| Q |
109 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa |
208 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
48783031 |
agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaa |
48782933 |
T |
|
| Q |
209 |
aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat |
304 |
Q |
| |
|
| || |||| ||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
48782932 |
a--catgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 220 - 348
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
| Q |
220 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca |
319 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||| |||| ||||||| ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- |
1979281 |
T |
|
| Q |
320 |
aactaacacaaactaggagaaacctcaca |
348 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| |
|
|
| T |
1979280 |
-actagcactaaccaggagaaacctcaca |
1979253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
| Q |
149 |
aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa |
247 |
Q |
| |
|
||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| || ||||||| |||||||||| ||||||||| |
|
|
| T |
17248112 |
aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa |
17248015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
| Q |
98 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
175 |
Q |
| |
|
|||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| ||||| |
|
|
| T |
36615361 |
ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt |
36615438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
| Q |
107 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
175 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| ||||||| |
|
|
| T |
30165968 |
agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt |
30165900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
| Q |
162 |
aacacacaatattttacgtggaaacccctcaacaaataa |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatattt-acgtggaaacccctcaacaaataa |
1979567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 1999230 - 1999189
Alignment:
| Q |
75 |
aaccaagggctctgataccactgttaggtaccagagtaacaa |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
1999230 |
aaccaagtgctctgataccactgttaggtatcagaataacaa |
1999189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 5823190 - 5823533
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5823190 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
5823289 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823290 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
5823389 |
T |
|
| Q |
211 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823390 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag |
5823489 |
T |
|
| Q |
311 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823490 |
gagaatactaactaacacaaactaggagaaacctcacaggagaa |
5823533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 2817178 - 2817510
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
2817178 |
cacatagcatactaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccagag |
2817277 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2817278 |
taacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaa |
2817376 |
T |
|
| Q |
211 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctctctcttataaat |
308 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
2817377 |
ccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaat |
2817476 |
T |
|
| Q |
309 |
aggagaatacaaactaacacaaactaggagaaac |
342 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| |
|
|
| T |
2817477 |
aggagaatactaactaatacaaactaggagaaac |
2817510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 96 - 354
Target Start/End: Original strand, 5818513 - 5818771
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818513 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact |
5818612 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5818613 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
5818712 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818713 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaa |
5818771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 54546200 - 54545941
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
54546200 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca |
54546102 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54546101 |
aataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccact |
54546002 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
54546001 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaa |
54545941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24659136 |
tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca |
24659235 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659236 |
aataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
| Q |
104 |
accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg |
203 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579360 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg |
4579261 |
T |
|
| Q |
204 |
gaaaaaa |
210 |
Q |
| |
|
||||||| |
|
|
| T |
4579260 |
gaaaaaa |
4579254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 282
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
| Q |
110 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa |
209 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
31204781 |
gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa |
31204878 |
T |
|
| Q |
210 |
accacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
282 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||||| | |||||||| || ||||||||||| |||||||| |
|
|
| T |
31204879 |
atcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag |
31204950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
| Q |
134 |
aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac |
232 |
Q |
| |
|
|||||||||| |||||||||| || |||||| ||||||||| |||| ||| || |||||| ||| |||||||| ||| |||||||||| | || |
|
|
| T |
35977258 |
aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt |
35977162 |
T |
|
| Q |
233 |
tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac |
291 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
| Q |
84 |
ctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataa |
140 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
25877142 |
ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa |
25877086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 354
Target Start/End: Original strand, 24671173 - 24671268
Alignment:
| Q |
249 |
aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca |
348 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaac--------actaggagaaacctcaca |
24671262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 9444007 - 9444350
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9444007 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
9444106 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444107 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
9444206 |
T |
|
| Q |
211 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9444207 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag |
9444306 |
T |
|
| Q |
311 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444307 |
gagaatactaactaacacaaactaggagaaacctcacaggagaa |
9444350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 96 - 354
Target Start/End: Original strand, 9439372 - 9439630
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439372 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
9439471 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
9439472 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
9439571 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439572 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaa |
9439630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
113 |
acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca |
169 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 4844943 - 4844870
Alignment:
| Q |
95 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacac |
168 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||| | |||||||||| |||| |||| ||| ||||||||| |
|
|
| T |
4844943 |
ctgttaggtacaagagaaacaaaacattatcacgctgtaaaaataagagttgagataagaagaattgaacacac |
4844870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 41718812 - 41718469
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41718812 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
41718713 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718712 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
41718613 |
T |
|
| Q |
211 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41718612 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag |
41718513 |
T |
|
| Q |
311 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718512 |
gagaatactaactaacacaaactaggagaaacctcacaggagaa |
41718469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 41723453 - 41723195
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723453 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
41723354 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
41723353 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
41723254 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723253 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaa |
41723195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 34360273 - 34360015
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34360273 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca |
34360174 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34360173 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
34360074 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
34360073 |
ctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaa |
34360015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 96 - 354
Target Start/End: Original strand, 29585300 - 29585558
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585300 |
tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
29585399 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
29585400 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccact |
29585499 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
29585500 |
ctctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaa |
29585558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 115 - 354
Target Start/End: Complemental strand, 34352546 - 34352307
Alignment:
| Q |
115 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
34352447 |
T |
|
| Q |
215 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352446 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga |
34352347 |
T |
|
| Q |
315 |
atacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
34352346 |
atactaactaacacaaactaggagaaatctcacaggagaa |
34352307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 27878624 - 27878969
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27878624 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccagag |
27878723 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878724 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
27878823 |
T |
|
| Q |
211 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878824 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
27878923 |
T |
|
| Q |
311 |
gagaatacaa--actaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
27878924 |
gagaatacaaacactaacactacctaggagaaacctcacaggagaa |
27878969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 1235018 - 1234760
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235018 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
1234919 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
1234918 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
1234819 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234818 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaa |
1234760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 96 - 354
Target Start/End: Original strand, 26976131 - 26976389
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
26976230 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26976231 |
aataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
26976330 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976331 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaa |
26976389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 96 - 354
Target Start/End: Original strand, 27873990 - 27874248
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873990 |
tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
27874089 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874090 |
aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
27874189 |
T |
|
| Q |
296 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874190 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
27874248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 18968194 - 18968007
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
18968194 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca |
18968095 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
18968094 |
aataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagag |
18968007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 95 - 318
Target Start/End: Complemental strand, 30986830 - 30986603
Alignment:
| Q |
95 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctc |
191 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
30986830 |
ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctc |
30986732 |
T |
|
| Q |
192 |
aacaaataaggggaaaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatt |
289 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
30986731 |
aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatt |
30986632 |
T |
|
| Q |
290 |
accactctctcttataaataggagaatac |
318 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |
|
|
| T |
30986631 |
accactctctcttgtaaatagaagaatac |
30986603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 30966923 - 30966747
Alignment:
| Q |
142 |
agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta |
30966825 |
T |
|
| Q |
241 |
agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
318 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30966824 |
agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatac |
30966747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 30967810 - 30967674
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
30967810 |
cacagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccagag |
30967711 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacga |
147 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30967710 |
taacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
200 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
21966860 |
ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa |
21966763 |
T |
|
| Q |
201 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa |
287 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| |||||||||| |
|
|
| T |
21966762 |
agggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 23012415 - 23012667
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||| |||| | | |||| |||| |||||| |||| ||||| || || |||| |||| || || |
|
|
| T |
23012415 |
cacaaagcatactaagttttttcttaccactgcacttgtttgttgatgtggaacaacaactacgagccaatggctcaaatgacattgttgggtaacaaag |
23012514 |
T |
|
| Q |
111 |
taacaaaa-tattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa |
208 |
Q |
| |
|
||| |||| |||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| ||| |
|
|
| T |
23012515 |
taaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaa |
23012612 |
T |
|
| Q |
209 |
aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
264 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
23012613 |
aacca-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct |
23012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 105 - 354
Target Start/End: Original strand, 5198664 - 5198913
Alignment:
| Q |
105 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198664 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
5198763 |
T |
|
| Q |
205 |
aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
5198764 |
aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttat |
5198863 |
T |
|
| Q |
305 |
aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198864 |
aaataggagaatactaactaacacaaactaggagaaacctcacaggagaa |
5198913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 825881 - 825632
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
825881 |
cacagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
825782 |
T |
|
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
825781 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaa |
825682 |
T |
|
| Q |
210 |
accacggggcaagagtagagaactttcactaagtggaagaaattacagga |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825681 |
accacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 15603272 - 15602944
Alignment:
| Q |
18 |
catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa |
117 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| | || |||||||||| |||||||||| | |||||||| ||||||| ||| ||||||| ||| |
|
|
| T |
15603272 |
catactaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaa |
15603173 |
T |
|
| Q |
118 |
atattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggg |
217 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15603172 |
atattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggg |
15603073 |
T |
|
| Q |
218 |
gcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
15603072 |
gcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaata |
15602973 |
T |
|
| Q |
318 |
caaactaacacaaactaggagaaacctca |
346 |
Q |
| |
|
| ||||||||| |||| ||||||||||| |
|
|
| T |
15602972 |
ctaactaacacttactaagagaaacctca |
15602944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830452 |
tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
830353 |
T |
|
| Q |
196 |
aataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
259 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830352 |
aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 103 - 354
Target Start/End: Complemental strand, 28716070 - 28715825
Alignment:
| Q |
103 |
taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg |
202 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
28716070 |
taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg |
28715972 |
T |
|
| Q |
203 |
ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt |
302 |
Q |
| |
|
||||||| |||| | |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | || | |
|
|
| T |
28715971 |
ggaaaaa-ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcct |
28715873 |
T |
|
| Q |
303 |
ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||||| ||| ||||| |
|
|
| T |
28715872 |
ataaataggagaat----actaacactacctaggagaaaccttacaagagaa |
28715825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 105 - 282
Target Start/End: Original strand, 30396920 - 30397096
Alignment:
| Q |
105 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
30396920 |
ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataaggga |
30397017 |
T |
|
| Q |
205 |
aaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
282 |
Q |
| |
|
|||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
30397018 |
aaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagag |
30397096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 13843719 - 13844014
Alignment:
| Q |
18 |
catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||||||| ||| |||| |||| |||||| |||||||| | | || |||||||| ||| |
|
|
| T |
13843719 |
catactaatatttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaa |
13843818 |
T |
|
| Q |
118 |
atattatcacgcagctaaaataagagacgagaaaagaggaac-tgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacgg |
216 |
Q |
| |
|
||||||||||| | |||| |||| ||||||| || || |||||||| |||||| |||||||||||||||||||||||||| |||||| | | |
|
|
| T |
13843819 |
atattatcacgtaagtaaagtaagttttgagaaaaaagaaaaatgaacaca--atattt-acgtggaaacccctcaacaaataaggagaaaaatt-atag |
13843914 |
T |
|
| Q |
217 |
ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat |
316 |
Q |
| |
|
| || |||| |||| ||||| ||||||||||||||||||||||| || | |||||||||| ||| || |||||||||||| | ||| |||||||||||| |
|
|
| T |
13843915 |
gttaaaagtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 256
Target Start/End: Original strand, 31592910 - 31593068
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| |||| || ||||||| ||||||||||| ||| || |||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||| | |
|
|
| T |
31592910 |
tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata |
31593009 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca |
256 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
31593010 |
aataa-gaaaaaaaaccac-agataagagtagagaactttcactaaccgaaagaaattaca |
31593068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 318
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| | || ||||| ||| |||||| ||||||| ||||||| |||||| || || || |||||||| |
|
|
| T |
13840240 |
tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaaca |
13840336 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
295 |
Q |
| |
|
|| |||||| |||| || || ||||||||||| || ||| || |||| || |||||||| ||||||||||||||| ||||||||||||||||| | | |
|
|
| T |
13840337 |
aacaagggggaaaa--catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaatt |
13840433 |
T |
|
| Q |
296 |
ctctcttataaataggagaatac |
318 |
Q |
| |
|
|||||||| ||||| ||||||| |
|
|
| T |
13840434 |
ctctcttaaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
| Q |
191 |
caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta |
290 |
Q |
| |
|
||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| | |||||||| ||||| ||| |||||||||||| |
|
|
| T |
8004292 |
caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta |
8004194 |
T |
|
| Q |
291 |
ccactctctcttataaataggagaatac |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8004193 |
-cactctctcttataaataggagaatac |
8004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
| Q |
116 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg |
215 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || |||| || || ||||||||||||||||| |||||||| ||||| |||||| ||||||||| | |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt |
12175865 |
T |
|
| Q |
216 |
gggcaagagtagagaa |
231 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
12175866 |
ggacaagagtagagaa |
12175881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
| Q |
111 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact |
160 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
9358158 |
taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact |
9358207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
| Q |
157 |
aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca |
256 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||||| |||||||||| ||||||||| | ||| |||||| |||||||| ||| | |||||||| | |
|
|
| T |
42117876 |
aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata |
42117779 |
T |
|
| Q |
257 |
ggacctctct |
266 |
Q |
| |
|
||||||||| |
|
|
| T |
42117778 |
agacctctct |
42117769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 830291 - 830244
Alignment:
| Q |
309 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaa |
830244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 101 - 354
Target Start/End: Original strand, 16183636 - 16183880
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183636 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
16183735 |
T |
|
| Q |
201 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
16183736 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctct |
16183834 |
T |
|
| Q |
300 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
||| |||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
16183835 |
ctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaa |
16183880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 8139940 - 8140183
Alignment:
| Q |
72 |
acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat |
171 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
8139940 |
acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat |
8140039 |
T |
|
| Q |
172 |
attttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaa |
271 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| || |
|
|
| T |
8140040 |
a-tttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaa |
8140138 |
T |
|
| Q |
272 |
tacaaggagagtacaattaccactctctcttataaataggagaatac |
318 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
8140139 |
tacaaggagagacaaattacc-ctctctctt-gaaataggagaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 96 - 322
Target Start/End: Complemental strand, 30235339 - 30235112
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30235339 |
tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacg |
30235241 |
T |
|
| Q |
196 |
aataagggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaaatacaaggagagtacaattacca |
293 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
30235240 |
aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacca |
30235141 |
T |
|
| Q |
294 |
ctctctcttataaataggagaatacaaac |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30235140 |
ctctctcttataaataggagaatacaaac |
30235112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 8138384 - 8138645
Alignment:
| Q |
16 |
agcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| | || ||||||| | ||||||||| |||||| ||||||||||| |||| ||||||| || |
|
|
| T |
8138384 |
agcatactaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatggctctaataccactgttgggtagcagagtatca |
8138479 |
T |
|
| Q |
116 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||| |||||||| || || | |||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
8138480 |
aagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaaggggagaaaaccacg |
8138578 |
T |
|
| Q |
216 |
gggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
282 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
8138579 |
aggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 25441161 - 25441073
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||| |
|
|
| T |
25441161 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt |
25441073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
| Q |
109 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa |
207 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| |||||||||||||||||| |
|
|
| T |
5102606 |
agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa |
5102703 |
T |
|
| Q |
208 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaatta |
254 |
Q |
| |
|
|| ||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102704 |
aa-ccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 36528415 - 36528529
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| |||| |||||||||||| || || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || |
|
|
| T |
36528415 |
tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg |
36528513 |
T |
|
| Q |
196 |
aataaggggaaaaaac |
211 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
36528514 |
aataaggaaaaaaaac |
36528529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 96 - 354
Target Start/End: Original strand, 27226 - 27475
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27226 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca |
27325 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
27326 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca- |
27424 |
T |
|
| Q |
295 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||| ||||||| |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
27425 |
tctctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaa |
27475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 46191546 - 46191299
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46191546 |
tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaaca |
46191449 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac |
294 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||| ||||||| | |
|
|
| T |
46191448 |
aataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-c |
46191350 |
T |
|
| Q |
295 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaa |
354 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
46191349 |
tctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaa |
46191299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
30697120 |
ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa |
30697218 |
T |
|
| Q |
201 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
282 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30697219 |
ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 4130401 - 4130215
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
4130401 |
tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaaca |
4130303 |
T |
|
| Q |
196 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag |
282 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4130302 |
aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag |
4130215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
| Q |
238 |
ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
318 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| | |||||||| ||||||| || |||||||| | ||||||||||||| |
|
|
| T |
30674787 |
ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac |
30674865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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