View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_17 (Length: 370)
Name: NF0777_low_17
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 111 - 366
Target Start/End: Complemental strand, 47580267 - 47580012
Alignment:
| Q |
111 |
catcatataaaacaataaacacattcagtaccagaatttaagaaaaagaatggattttaaatcactaattaacttgcctgagagatgaaaaccatagcaa |
210 |
Q |
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| T |
47580267 |
catcatataaaacaataaacacattcagtaccagaatttaagaaatagaatggattttaaatcactaattaacttgcctgagagatgaaaaccataacaa |
47580168 |
T |
|
| Q |
211 |
taagtgccggaagcccaacttcaatacaagttgccagctgcaacagtgattggaaaaattaaaggggaagaatcatacaatataatcctatatatcctca |
310 |
Q |
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| T |
47580167 |
taagtgccggaagcccaacttcaatacaagttgccagctgcaacagtgattggaaaaattaaaggggaagaatcatacaatataatcctatatatcctca |
47580068 |
T |
|
| Q |
311 |
agtcctaaacttatagaagctgaattgcatgaaaaatttaacatggatacaagagt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47580067 |
agtcctaaacttatagaagctgaattgcatgaaaaatttaacatggatacaagagt |
47580012 |
T |
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