View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0777_low_18 (Length: 368)

Name: NF0777_low_18
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0777_low_18
NF0777_low_18
[»] chr8 (14 HSPs)
chr8 (124-359)||(19709272-19709507)
chr8 (52-124)||(19709667-19709739)
chr8 (129-351)||(41651789-41652013)
chr8 (129-213)||(22454636-22454719)
chr8 (129-220)||(5892690-5892780)
chr8 (297-355)||(5892852-5892910)
chr8 (129-187)||(28291514-28291572)
chr8 (138-358)||(15340695-15340914)
chr8 (138-358)||(15429760-15429979)
chr8 (138-358)||(15521064-15521283)
chr8 (129-203)||(32352277-32352350)
chr8 (129-203)||(32368938-32369011)
chr8 (129-174)||(22449988-22450033)
chr8 (225-276)||(6017739-6017790)
[»] chr6 (8 HSPs)
chr6 (183-355)||(4029966-4030139)
chr6 (129-233)||(241940-242044)
chr6 (131-346)||(28712471-28712685)
chr6 (128-241)||(13002734-13002847)
chr6 (148-347)||(16793397-16793597)
chr6 (128-222)||(16142637-16142731)
chr6 (128-204)||(24154095-24154170)
chr6 (52-120)||(242216-242289)
[»] chr1 (5 HSPs)
chr1 (124-340)||(23455246-23455463)
chr1 (129-351)||(33379136-33379357)
chr1 (129-203)||(24633241-24633314)
chr1 (131-189)||(25018745-25018802)
chr1 (148-251)||(13202002-13202104)
[»] scaffold1024 (1 HSPs)
scaffold1024 (124-340)||(2753-2969)
[»] chr7 (9 HSPs)
chr7 (128-348)||(25620895-25621115)
chr7 (129-257)||(7524624-7524752)
chr7 (128-256)||(4978711-4978840)
chr7 (184-279)||(41132081-41132177)
chr7 (129-204)||(7947953-7948026)
chr7 (129-164)||(1545599-1545634)
chr7 (138-204)||(12469031-12469096)
chr7 (172-274)||(9022403-9022507)
chr7 (128-204)||(11993849-11993924)
[»] chr2 (7 HSPs)
chr2 (129-277)||(17676659-17676806)
chr2 (128-277)||(15437899-15438049)
chr2 (128-272)||(32890489-32890632)
chr2 (128-311)||(2482114-2482294)
chr2 (131-208)||(21498048-21498124)
chr2 (172-277)||(17637947-17638052)
chr2 (128-204)||(28760590-28760665)
[»] chr4 (6 HSPs)
chr4 (128-257)||(26654008-26654137)
chr4 (123-203)||(24924960-24925039)
chr4 (129-204)||(16647147-16647221)
chr4 (128-233)||(12568226-12568332)
chr4 (297-355)||(12425022-12425080)
chr4 (148-277)||(16928474-16928602)
[»] chr5 (9 HSPs)
chr5 (129-340)||(36499346-36499557)
chr5 (129-297)||(28619148-28619314)
chr5 (129-257)||(21390754-21390882)
chr5 (217-323)||(24364025-24364133)
chr5 (128-226)||(9423216-9423315)
chr5 (128-174)||(31532997-31533043)
chr5 (52-124)||(22987580-22987657)
chr5 (217-323)||(24309193-24309302)
chr5 (172-221)||(25667188-25667236)
[»] chr3 (11 HSPs)
chr3 (263-356)||(12145212-12145305)
chr3 (123-243)||(27717858-27717978)
chr3 (131-208)||(14132041-14132117)
chr3 (128-198)||(9101630-9101700)
chr3 (129-203)||(53589043-53589117)
chr3 (138-190)||(12145106-12145157)
chr3 (128-277)||(48896134-48896284)
chr3 (128-204)||(44450798-44450873)
chr3 (179-277)||(7535984-7536083)
chr3 (148-314)||(15759703-15759867)
chr3 (138-204)||(45279852-45279917)
[»] scaffold0167 (1 HSPs)
scaffold0167 (148-233)||(10191-10276)
[»] scaffold0320 (1 HSPs)
scaffold0320 (148-233)||(6508-6593)
[»] scaffold0431 (1 HSPs)
scaffold0431 (297-355)||(4895-4953)
[»] scaffold0040 (1 HSPs)
scaffold0040 (124-208)||(26842-26927)
[»] scaffold0039 (1 HSPs)
scaffold0039 (128-208)||(51570-51649)
[»] scaffold0024 (1 HSPs)
scaffold0024 (148-221)||(38816-38887)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 124 - 359
Target Start/End: Complemental strand, 19709507 - 19709272
Alignment:
124 acgacggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaagc 223  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19709507 acgacggtactttaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaagc 19709408  T
224 taactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttccttcga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19709407 taactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttccttcga 19709308  T
324 gaacaactgcttggcttcgaccaatcttctctctgc 359  Q
     |||||||||||||||||||||||||||||||||||    
19709307 caacaactgcttggcttcgaccaatcttctctctgc 19709272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 19709739 - 19709667
Alignment:
52 caatctttttccagaaagtgcgtgaatgttcatcaataggtttctttatgaagaagacgaagttttgtacgaa 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
19709739 caatcttttttcagaaagtgcgtgaatgttcatcaataggtttctttatgaagaagatgaagttttgtacgaa 19709667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 351
Target Start/End: Complemental strand, 41652013 - 41651789
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaa- 226  Q
    |||||||| |||||||||||||||||| |||||| | |||   |||||| |||||||||||   |||||||||||| |||  ||| || |||||| |||     
41652013 ggtacttcgagtgctagaattctataaatgatttccgaccctgtttttcctatgaaaaactcttatttatacatagaaaag-taactgtaaaaagttaaa 41651915  T
227 ctgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaa-ctgctgctttttgaattcaaattattttcc-ttcgag 324  Q
    ||||| ||| ||||||| ||||||||||||| ||  ||||| ||||||||| |||  ||||| ||||||||| | |||||  |||  |||||| |||||     
41651914 ctgccgcgaactgcacttcttccatcgaaaactgcttgtccaccacgtcttcaataagaaaaactgctgcttct-gaatttgaatgtttttcccttcgac 41651816  T
325 aacaactgcttggcttcgaccaatctt 351  Q
    |||||||||||||||||||||||||||    
41651815 aacaactgcttggcttcgaccaatctt 41651789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 22454719 - 22454636
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataa 213  Q
    |||||||  ||||||||||||||||||||||||||| ||| | |||||| ||||||||||||| || ||||||||| ||| ||||    
22454719 ggtactttgagtgctagaattctataagtgatttgcgaccca-tttttcttatgaaaaactactatatatacataggaaaaataa 22454636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 5892690 - 5892780
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaa 220  Q
    |||||||| |||||||||||||||||| |||||||  |||   |||||||||||||||||||| || |||||||||| || |||| ||||||    
5892690 ggtacttcgagtgctagaattctataaatgatttgtgacc-cgtttttcatatgaaaaactactatatatacatagtgaaaataactgaaaa 5892780  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 5892852 - 5892910
Alignment:
297 ttttgaattcaaattattttccttcgagaacaactgcttggcttcgaccaatcttctct 355  Q
    |||||||||  ||||||||||||| || |||||||||||||||||||||| ||||||||    
5892852 ttttgaatttgaattattttcctttgacaacaactgcttggcttcgaccattcttctct 5892910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 28291572 - 28291514
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaa 187  Q
    |||||||| ||||||||||||||||||||||||||| |||  ||||||| |||||||||    
28291572 ggtacttcgagtgctagaattctataagtgatttgcgaccatttttttcgtatgaaaaa 28291514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 358
Target Start/End: Complemental strand, 15340914 - 15340695
Alignment:
138 agtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gct-aactgccacga 235  Q
    |||||||||||||||||| |||||||| ||| | |||||||||||||||||||  |||||||| ||| | | |||| | |||||  || ||||| |||||    
15340914 agtgctagaattctataaatgatttgcgacc-aatttttcatatgaaaaactattatttatacctagaagaaataactaaaaaatactaaactgacacga 15340816  T
236 tctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttcc-ttcgagaacaactgct 334  Q
     ||||||| | || | |||||| ||  |||| |||||||||  |   |  ||||| |||| |||||||||  |||| |||||| ||||| |||| |||||    
15340815 gctgcacttcctcgaccgaaaactgcatgtctcccacgtctccacaag--aaactactgc-ttttgaatttgaattcttttcctttcgacaacagctgct 15340719  T
335 tggcttcgaccaatcttctctctg 358  Q
    |||||||||||| |||||||||||    
15340718 tggcttcgaccattcttctctctg 15340695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 358
Target Start/End: Complemental strand, 15429979 - 15429760
Alignment:
138 agtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gct-aactgccacga 235  Q
    |||||||||||||||||| |||||||| ||| | |||||||||||||||||||  |||||||| ||| | | |||| | |||||  || ||||| |||||    
15429979 agtgctagaattctataaatgatttgcgacc-aatttttcatatgaaaaactattatttatacctagaagaaataactaaaaaatactaaactgacacga 15429881  T
236 tctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttcc-ttcgagaacaactgct 334  Q
     ||||||| | || | |||||| ||  |||| |||||||||  |   |  ||||| |||| |||||||||  |||| |||||| ||||| |||| |||||    
15429880 gctgcacttcctcgaccgaaaactgcatgtctcccacgtctccacaag--aaactactgc-ttttgaatttgaattcttttcctttcgacaacagctgct 15429784  T
335 tggcttcgaccaatcttctctctg 358  Q
    |||||||||||| |||||||||||    
15429783 tggcttcgaccattcttctctctg 15429760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 358
Target Start/End: Complemental strand, 15521283 - 15521064
Alignment:
138 agtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gct-aactgccacga 235  Q
    |||||||||||||||||| |||||||| ||| | |||||||||||||||||||  |||||||| ||| | | |||| | |||||  || ||||| |||||    
15521283 agtgctagaattctataaatgatttgcgacc-aatttttcatatgaaaaactattatttatacctagaagaaataactaaaaaatactaaactgacacga 15521185  T
236 tctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttcc-ttcgagaacaactgct 334  Q
     ||||||| | || | |||||| ||  |||| |||||||||  |   |  ||||| |||| |||||||||  |||| |||||| ||||| |||| |||||    
15521184 gctgcacttcctcgaccgaaaactgcatgtctcccacgtctccacaag--aaactactgc-ttttgaatttgaattcttttcctttcgacaacagctgct 15521088  T
335 tggcttcgaccaatcttctctctg 358  Q
    |||||||||||| |||||||||||    
15521087 tggcttcgaccattcttctctctg 15521064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 32352277 - 32352350
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacata 203  Q
    |||||||| ||||||| ||||||||||||||||||| |||   |||||| ||||||||||||| || ||||||||    
32352277 ggtacttcgagtgctataattctataagtgatttgcgacc-cgtttttcttatgaaaaactactatatatacata 32352350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 32368938 - 32369011
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacata 203  Q
    |||||||| ||||||| ||||||||||||||||||| |||   |||||| ||||||||||||| || ||||||||    
32368938 ggtacttcgagtgctataattctataagtgatttgcgacc-cgtttttcttatgaaaaactactatatatacata 32369011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 22450033 - 22449988
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctatttt 174  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||    
22450033 ggtacttcgagtgctagaattctataagtgatttgcgacctttttt 22449988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 6017739 - 6017790
Alignment:
225 aactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtct 276  Q
    ||||||||||| ||||| | |||| |||||||| ||||||||||||||||||    
6017739 aactgccacgagctgcatttcttcgatcgaaaactgtctgtcccccacgtct 6017790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 183 - 355
Target Start/End: Complemental strand, 4030139 - 4029966
Alignment:
183 aaaaactaccatttatacatagtaaatataaatgaaaaagctaactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatg 282  Q
    ||||||||| |||||||||||||||| || | |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||    
4030139 aaaaactactatttatacatagtaaaaatgactgaaaaagctaactgccacgatctgcactcctacaatcgaaaattgtctgtccaccacgtcttcaatg 4030040  T
283 ggaaaactgctgc-tttttgaattcaaattattttccttcgagaacaactgcttggcttcgaccaatcttctct 355  Q
    ||||||||| ||| |||||||||||||||| ||||||||||| |  |||||||||||||||| |||||| ||||    
4030039 ggaaaactgttgcttttttgaattcaaattcttttccttcgatagaaactgcttggcttcgatcaatctcctct 4029966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 242044 - 241940
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaac 227  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||| ||| |||| | ||||||||||||    
242044 ggtacttcgagtgctagaattctataagtgatttgcgaccta-tttttcatatgaaaaactactatttatagatagcaaaaataactagaaaaagctaac 241946  T
228 tgccac 233  Q
    ||||||    
241945 tgccac 241940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 131 - 346
Target Start/End: Original strand, 28712471 - 28712685
Alignment:
131 tacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataa--atgaaaaagctaact 228  Q
    |||||| ||||||||||||||||||||||||||| || |  |||||| |||||||||||| ||||||||||||  ||| ||||  || |||||   ||||    
28712471 tacttcgagtgctagaattctataagtgatttgcgacat-gtttttcttatgaaaaactatcatttatacata-aaaaaataactataaaaaactaaact 28712568  T
229 gccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttccttcgagaaca 328  Q
    ||||||| | ||||| ||||||||||||| |   ||||||||||||||| | |  |||||| ||||| |||||||||  |||| ||| |||||||  |||    
28712569 gccacgaacggcacttcttccatcgaaaactacgtgtcccccacgtcttcagtaagaaaaccgctgc-ttttgaatttgaattctttcccttcgacgaca 28712667  T
329 actgcttggcttcgacca 346  Q
    ||| ||||||||||||||    
28712668 actacttggcttcgacca 28712685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 13002847 - 13002734
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaagct-aa 226  Q
    ||||||||| |||||||||||||||||| |||||||| |  |  |||||| ||||||||||||  ||||||||||||| || |||| ||  ||| || ||    
13002847 cggtacttcgagtgctagaattctataaatgatttgcta-ttcgtttttcctatgaaaaactattatttatacatagtgaaaataactgccaaaactaaa 13002749  T
227 ctgccacgatctgca 241  Q
    ||||||||| |||||    
13002748 ctgccacgagctgca 13002734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 347
Target Start/End: Original strand, 16793397 - 16793597
Alignment:
148 ttctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gctaactgccacgatctgcactcct 246  Q
    |||| |||||||||||| || ||||||  |||||| |||||||| |||||||||||||||| |  |  |||||| ||||| |||| |||||  |||| |     
16793397 ttctttaagtgatttgcgacttattttc-catatggaaaactactatttatacatagtaaacacgaccgaaaaaggctaattgccgcgatcaacacttcc 16793495  T
247 tccatcgaaaattgtctgtcccccacgtcttt-aatgggaaaactgctgctttttgaattcaaattattttccttcgagaacaactgcttggcttcgacc 345  Q
    |||||||||||  |  |||||||||||||||| | |  | |||| | ||||||||||||||||| |  ||  |||||| |  |||| |||||||||||||    
16793496 tccatcgaaaaccgcttgtcccccacgtctttcactaaggaaaccgttgctttttgaattcaaactccttctcttcgatagtaactccttggcttcgacc 16793595  T
346 aa 347  Q
    ||    
16793596 aa 16793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 16142637 - 16142731
Alignment:
128 cggtacttcaagtgct-agaatt-ctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaag 222  Q
    ||||||||| |||||| |||||| |||||| |||||||| ||| |||||  |||||| |||||||| |||||||||||||||| |||| ||||||||    
16142637 cggtacttcgagtgcttagaatttctataaatgatttgcgacccattttc-catatggaaaactactatttatacatagtaaa-ataactgaaaaag 16142731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 24154170 - 24154095
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatag 204  Q
    ||||||||| ||||||||||||||| || |||||||| ||||  |||||| ||| ||||||||  ||||||||||||    
24154170 cggtacttcgagtgctagaattctacaaatgatttgcgacct-gtttttcctataaaaaactattatttatacatag 24154095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 242289 - 242216
Alignment:
52 caatctttttccagaaagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaagttttgta 120  Q
    |||| |||||||||||||||| |||||||||||||     ||||||| ||||||||| | || |||||||||||    
242289 caatatttttccagaaagtgcttgaatgttcatcatattcataggttactttatgaacatgaagaagttttgta 242216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 124 - 340
Target Start/End: Original strand, 23455246 - 23455463
Alignment:
124 acgacggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg-aaaaag 222  Q
    |||| |||||||| ||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||  ||||||||||||| || |||| || ||||||    
23455246 acgatggtacttcgagtgctagaattctataagagatttgcaaccaatttttttatatgaaaaactattatttatacatagtgaaaataactgtaaaaag 23455345  T
223 ctaactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttccttcg 322  Q
    ||||||||||||| ||||||| |||| | |||||| ||  ||||||||||||||| |||  |||||||| || ||||| |||||||||||||| ||||||    
23455346 ctaactgccacgaactgcacttcttctaacgaaaactgcatgtcccccacgtcttcaataagaaaactgatgattttttaattcaaattatttcccttcg 23455445  T
323 agaacaactgcttggctt 340  Q
    | ||||||||||||||||    
23455446 acaacaactgcttggctt 23455463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 351
Target Start/End: Complemental strand, 33379357 - 33379136
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg--aaaaagct-a 225  Q
    |||||||| ||| |||||||| |||||||||||||| | ||| |||||||||||||||||||  |||||| ||||| | | |||| ||  || ||||| |    
33379357 ggtacttcgagtactagaattttataagtgatttgcga-ctaatttttcatatgaaaaactattatttatgcatagaagaaataactgtaaagaagctaa 33379259  T
226 actgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattatttt-ccttcgag 324  Q
    |||||||||| ||||||| ||| ||||||||| ||| |||| |||||||| | |||   ||||||| | | |||||||||  ||||||||| |||||||     
33379258 actgccacgagctgcacttctttcatcgaaaactgtatgtctcccacgtc-tcaat--aaaaactgatac-ttttgaatttgaattattttcccttcgac 33379163  T
325 aacaactgcttggcttcgaccaatctt 351  Q
    ||||||||||||| |||||||||||||    
33379162 aacaactgcttggtttcgaccaatctt 33379136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 24633314 - 24633241
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacata 203  Q
    |||||||||||||||||||| | |||||||||||| || | |||||||| ||||||||||||| || ||||||||    
24633314 ggtacttcaagtgctagaataccataagtgatttg-cagccattttttcttatgaaaaactactatatatacata 24633241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 25018745 - 25018802
Alignment:
131 tacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaact 189  Q
    |||||| ||||| ||||||||||||||||||||| ||||  ||||||||||||||||||    
25018745 tacttcgagtgccagaattctataagtgatttgcgacct-gtttttcatatgaaaaact 25018802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 13202104 - 13202002
Alignment:
148 ttctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaag-ctaactgccacgatctgcactcc 245  Q
    ||||||||||||||||| || | ||||| | ||||||||||||| |||||||||||| ||| |||| | ||||||| |||||| |||||||| ||||| |    
13202104 ttctataagtgatttgcgacatgtttttcc-tatgaaaaactactatttatacatagcaaa-ataactggaaaaagcctaact-ccacgatcagcacttc 13202008  T
246 ttccat 251  Q
    ||||||    
13202007 ttccat 13202002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 124 - 340
Target Start/End: Complemental strand, 2969 - 2753
Alignment:
124 acgacggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg-aaaaag 222  Q
    |||| |||||||| |||||||||||||||| || ||||||| ||| ||||||| |||||||||||||  ||||||||||||| || |||| || ||||||    
2969 acgatggtacttcgagtgctagaattctatgagagatttgcaaccaatttttt-atatgaaaaactattatttatacatagtgaaaataactgtaaaaag 2871  T
223 ctaactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttccttcg 322  Q
    |||||||||||||  |||||| |||| | |||||| ||  ||||||||||||||| |||  |||||||| || ||||| |||||||||||||| ||||||    
2870 ctaactgccacgaattgcacttcttctaacgaaaactgcatgtcccccacgtcttcaataagaaaactgatgattttttaattcaaattatttcccttcg 2771  T
323 agaacaactgcttggctt 340  Q
    | ||||||||||||||||    
2770 acaacaactgcttggctt 2753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 128 - 348
Target Start/End: Complemental strand, 25621115 - 25620895
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaa 226  Q
    ||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||| |||| | |||||||||||    
25621115 cggtacttcgagtgctagaattttataagtgatttgcgaccta-tttttcatatgaaaaactactatttacacatagtaaaaataactagaaaaagctaa 25621017  T
227 ctgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattt-tccttcgaga 325  Q
    ||||||||| |  |||| |||||||| |||| ||  ||||||||||||||| | |  | |||| ||||| ||||||||||||||||||| | |||||| |    
25621016 ctgccacgaacaacacttcttccatcaaaaactgattgtcccccacgtcttcattaaggaaaccgctgc-ttttgaattcaaattatttcttcttcgaca 25620918  T
326 acaactgcttggcttcgaccaat 348  Q
    ||||||| |||| ||||||||||    
25620917 acaactgtttggtttcgaccaat 25620895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 7524752 - 7524624
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaac 227  Q
    ||||||| |||||||| ||||||||||||||||||  ||||| |||| ||||||||||||||| |||||||||||||||| | || | ||||||||||||    
7524752 ggtacttgaagtgctataattctataagtgatttgtgaccta-ttttccatatgaaaaactactatttatacatagtaaaaacaactggaaaaagctaac 7524654  T
228 tgccacgatctgcactccttccatcgaaaa 257  Q
    |||||||| |  |||| | |||||||||||    
7524653 tgccacgaacaacacttcctccatcgaaaa 7524624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 4978840 - 4978711
Alignment:
128 cggtacttcaagtgctagaatt-ctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagcta 225  Q
    ||||||||| |||||||||||| |||||||| |||||| |||||||||| |||||||||||||||  |||||||||||| || |||| | ||||||||||    
4978840 cggtacttcgagtgctagaatttctataagtaatttgcgacctattttt-catatgaaaaactacattttatacatagtgaaaataactggaaaaagcta 4978742  T
226 actgccacgatctgcactccttccatcgaaa 256  Q
    |||||||||| |  || | ||||||||||||    
4978741 actgccacgaacatcaattcttccatcgaaa 4978711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 41132081 - 41132177
Alignment:
184 aaaactaccatttatacatagtaaatataaatgaaaaag--ctaactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtcttta 279  Q
    |||||||| |||||||||||||||| |||| |||||||   |||||| ||||||||  |||| ||||||||||||| ||| ||||| |||||||||||    
41132081 aaaactactatttatacatagtaaa-ataactgaaaaaagactaactaccacgatcatcacttcttccatcgaaaactgtttgtcctccacgtcttta 41132177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 7948026 - 7947953
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatag 204  Q
    ||||||||  |||||||||||||||||||||||||| |||   |||||| ||||||||||||  || |||||||||    
7948026 ggtacttcgggtgctagaattctataagtgatttgcaacc--ctttttcttatgaaaaactattatatatacatag 7947953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 1545634 - 1545599
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgc 164  Q
    ||||||||||||||| ||||||||||||||||||||    
1545634 ggtacttcaagtgctcgaattctataagtgatttgc 1545599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 12469031 - 12469096
Alignment:
138 agtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatag 204  Q
    ||||||||||||||||||||||||||| ||| | |||| | ||||||||||||| || | |||||||    
12469031 agtgctagaattctataagtgatttgcgaccca-ttttccttatgaaaaactactatatgtacatag 12469096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 9022507 - 9022403
Alignment:
172 tttttcatatgaaaaactacc-atttatacatagtaaatataaatgaaaaag-ctaactgccacgatctgcactccttccatcga-aaattgtctgtccc 268  Q
    |||| |||||| ||||||||| |||||||||| | ||| |||| | |||||| ||||||||||||||| ||||| |||||||||| ||| ||| |||| |    
9022507 ttttccatatggaaaactacctatttatacatcgaaaa-ataatttaaaaaggctaactgccacgatcagcacttcttccatcgagaaactgtttgtctc 9022409  T
269 ccacgt 274  Q
    ||||||    
9022408 ccacgt 9022403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 11993924 - 11993849
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatag 204  Q
    ||||||||| || ||||||||| ||||| |||||||| |||| ||||||   |||||||||||  ||||||||||||    
11993924 cggtacttcgagcgctagaattttataaatgatttgcgacctctttttttc-atgaaaaactattatttatacatag 11993849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 129 - 277
Target Start/End: Original strand, 17676659 - 17676806
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaag-ctaac 227  Q
    |||||||| ||||||||||||||||||||||||||  ||| |||||  ||||||||||||||| |||||||||||||||| |||| |||||||| |||||    
17676659 ggtacttcgagtgctagaattctataagtgatttgtgacccattttc-catatgaaaaactactatttatacatagtaaa-ataactgaaaaaggctaac 17676756  T
228 tgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctt 277  Q
    ||| | |||| ||||| ||||||||||||||||  |||||||||||||||    
17676757 tgctatgatcagcacttcttccatcgaaaattgattgtcccccacgtctt 17676806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 277
Target Start/End: Complemental strand, 15438049 - 15437899
Alignment:
128 cggtacttcaagtgctagaatt-ctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagcta 225  Q
    ||||||||| |||||||||||| |||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||| || |||||||||    
15438049 cggtacttcgagtgctagaatttctattagtgatttgcgacctattttt-catatgaaaaactacaatttatacatagtaaaaataactgaaaaaagcta 15437951  T
226 actgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctt 277  Q
    |||||||||| |  ||||||||||| |||||| ||  ||| |||||||||||    
15437950 actgccacgaacaacactccttccaccgaaaactgcttgttccccacgtctt 15437899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 272
Target Start/End: Original strand, 32890489 - 32890632
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gctaa 226  Q
    ||||||||| |||||||||||| |||||||||||||| ||||| ||||  ||||| |||||||| |||||||||||||||| |||| ||||||| |||||    
32890489 cggtacttcgagtgctagaattttataagtgatttgcgaccta-ttttcgatatggaaaactactatttatacatagtaaa-ataattgaaaaaggctaa 32890586  T
227 ctgccacgatctgcactccttccatcgaaaattgtctgtcccccac 272  Q
    |||||||||||  |||| | | |||||||||| |  ||||||||||    
32890587 ctgccacgatcaacacttccttcatcgaaaatcgcttgtcccccac 32890632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 311
Target Start/End: Original strand, 2482114 - 2482294
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaagctaac 227  Q
    ||||||||| ||||||||||||||||||||||||||| ||| | ||||||  |||||||||| | ||||||| ||||| || || | |||||||||||||    
2482114 cggtacttcgagtgctagaattctataagtgatttgcgaccca-tttttcgaatgaaaaacttctatttataaatagt-aagatgactgaaaaagctaac 2482211  T
228 tgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaatt 311  Q
    |||||||| |  |||| ||| ||||||||| ||  |||||||||||| || | |  | |||| ||||| |||||||||||||||    
2482212 tgccacgaacaacacttctttcatcgaaaactgcttgtcccccacgttttcactaaggaaaccgctgc-ttttgaattcaaatt 2482294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 21498124 - 21498048
Alignment:
131 tacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaa 208  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||| ||||||||||||||||    
21498124 tacttcaagtgctagaattctataaatgatttgcgaccta-tttctcatatgaaaaactactatttatacatagtaaa 21498048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 277
Target Start/End: Original strand, 17637947 - 17638052
Alignment:
172 tttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gctaactgccacgatctgcactccttccatcgaaaattgtctgtccccc 270  Q
    |||| ||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||| | | || | ||| ||||||||||||||||  ||||||||    
17637947 ttttccatatgaaaaactactatttatacatagtaaa-ataactgaaaaaggctaactgctatgttcagaacttcttccatcgaaaattgattgtccccc 17638045  T
271 acgtctt 277  Q
    |||||||    
17638046 acgtctt 17638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 28760665 - 28760590
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatag 204  Q
    ||||||||| |||||||||||| ||||| ||||||| |  ||  ||||||||||||||||||   ||||||||||||    
28760665 cggtacttcgagtgctagaattttataaatgatttg-cgtcttgtttttcatatgaaaaactcttatttatacatag 28760590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 26654137 - 26654008
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaa 226  Q
    ||||||||| ||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||| || |||| || ||||||||||    
26654137 cggtacttcgagtgctaaaattctataagtgatttgcgatctattttt-catatgaaaaactactatttatacatagtgaaaataactgaaaaaagctaa 26654039  T
227 ctgccacgatctgcactccttccatcgaaaa 257  Q
    ||||||||| |  |||| | |||||||||||    
26654038 ctgccacgaacatcacttcctccatcgaaaa 26654008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 24924960 - 24925039
Alignment:
123 aacgacggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacata 203  Q
    |||| ||||||||| ||||||||||||||||||||||||||| | |  |||||||| |||||||||||| || ||||||||    
24924960 aacgccggtacttcgagtgctagaattctataagtgatttgcgaac-cttttttcaaatgaaaaactactatatatacata 24925039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 16647147 - 16647221
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatag 204  Q
    |||||||  ||||||||||||||||||||||||||| |||  ||||||| ||||||||||||| || |||||||||    
16647147 ggtactttgagtgctagaattctataagtgatttgcgacc-cttttttcttatgaaaaactactatatatacatag 16647221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 12568226 - 12568332
Alignment:
128 cggtacttcaagtgctagaatt-ctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagcta 225  Q
    ||||||||| |||||||||||| ||||||  ||||||| ||||  ||||| |||||||||||||| |||||||||||| ||| | || | ||||||||||    
12568226 cggtacttcgagtgctagaatttctataaaagatttgcgacctcattttt-atatgaaaaactactatttatacatagcaaaaacaactggaaaaagcta 12568324  T
226 actgccac 233  Q
    ||| ||||    
12568325 actaccac 12568332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 12425022 - 12425080
Alignment:
297 ttttgaattcaaattattttccttcgagaacaactgcttggcttcgaccaatcttctct 355  Q
    |||||||||  |||||||||||||||| |||||||||| | ||| ||||||||||||||    
12425022 ttttgaatttgaattattttccttcgacaacaactgctcgactttgaccaatcttctct 12425080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 16928602 - 16928474
Alignment:
148 ttctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagt-aaatataaatgaaaaagctaactgccacgatctgcactcct 246  Q
    ||||||||| ||||||| |||||||||  |||||| |||||||  ||||||||||||| ||||||   | |||| |||| |||||||||||  |||| ||    
16928602 ttctataagggatttgcgacctattttc-catatggaaaactattatttatacatagtaaaatat-ctttaaaaggctagctgccacgatcaacacttct 16928505  T
247 tccatcgaaaattgtctgtcccccacgtctt 277  Q
    |||||||||||  |  |||||||||||||||    
16928504 tccatcgaaaaccgcttgtcccccacgtctt 16928474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 340
Target Start/End: Complemental strand, 36499557 - 36499346
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaac 227  Q
    |||||||| |||  |||||||||||||||||||| | ||||||||||| |||||||||||||  ||||||||||||| |  | || || |||||||||||    
36499557 ggtacttcgagttttagaattctataagtgatttacgacctatttttt-atatgaaaaactattatttatacatagtgacaacaactgcaaaaagctaac 36499459  T
228 tgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaatta-ttttccttcgagaa 326  Q
    ||||| || ||||||| ||||||||||||| |   ||||||||||||||| |||  |||| |||| || |||||||||  ||||| ||||||||||| |     
36499458 tgccatgaactgcacttcttccatcgaaaactccatgtcccccacgtcttcaataagaaatctgcggc-ttttgaatttgaattatttttccttcgacag 36499360  T
327 caactgcttggctt 340  Q
    ||||| ||| ||||    
36499359 caactacttagctt 36499346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 297
Target Start/End: Complemental strand, 28619314 - 28619148
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagct-aa 226  Q
    |||||||| ||||||||||||||||||||||||||| ||| | |||||| |||||||||||  ||||||||||||| ||| |||| || |||||||| ||    
28619314 ggtacttctagtgctagaattctataagtgatttgcgaccca-tttttcttatgaaaaact--catttatacatag-aaaaataactgtaaaaagctaaa 28619219  T
227 ctgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctt 297  Q
    |||||| || ||||||| ||||||||||||||||  |||||| ||||| || |||  |||||||| |||||    
28619218 ctgccatgaactgcacttcttccatcgaaaattggttgtccctcacgttttcaataagaaaactgttgctt 28619148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 257
Target Start/End: Original strand, 21390754 - 21390882
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaac 227  Q
    |||||||| |||||| ||||||||||| | |||||  ||||||||| |||||||||||||||  |||||||||||||||| || ||| ||||||| ||||    
21390754 ggtacttcgagtgcttgaattctataaataatttgtgacctatttt-tcatatgaaaaactattatttatacatagtaaaaatgaatggaaaaaggtaac 21390852  T
228 tgccacgatctgcactccttccatcgaaaa 257  Q
    |||| | | |  ||||||||| ||||||||    
21390853 tgccgcaaacaacactccttcgatcgaaaa 21390882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 24364133 - 24364025
Alignment:
217 aaaaagctaactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgc--tttttgaattcaaattatt 314  Q
    |||||||||||| |||||| ||||||| | ||||||||||| ||  ||||||||||||||| |||  ||||||| ||||  |||||||||||||||  ||    
24364133 aaaaagctaactaccacgaactgcacttcatccatcgaaaactgcttgtcccccacgtcttcaataagaaaactactgctttttttgaattcaaatactt 24364034  T
315 ttccttcga 323  Q
    | |||||||    
24364033 tcccttcga 24364025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 9423216 - 9423315
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcat-atgaaaaactaccatttatacatagtaaatataaatgaaaaagctaa 226  Q
    ||||||||| |||||||||||| ||||| |||||||| |||| ||||||| | |||||||||||  |||||||||||| | | ||||||| |||| ||||    
9423216 cggtacttcgagtgctagaattttataaatgatttgcgaccttttttttcttcatgaaaaactattatttatacatagaagaaataaatgcaaaaactaa 9423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 31533043 - 31532997
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctatttt 174  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
31533043 cggtacttcgagtgctagaattctataagtgatttgcgacctatttt 31532997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 22987580 - 22987657
Alignment:
52 caatctttttccagaaagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaagttttgtacgaa 124  Q
    |||||||||||||||||||| ||||||||||||||     ||||||| |||||| || |||| |||||||||||||||    
22987580 caatctttttccagaaagtgtgtgaatgttcatcatattcataggttgctttataaacaagatgaagttttgtacgaa 22987657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 24309193 - 24309302
Alignment:
217 aaaaagctaactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctttaatgggaaaact-gctgc--tttttgaattcaaattat 313  Q
    |||||||||||| |||||| ||||||| | ||||||||||| ||  ||||||||||||||| |||  |||||||  ||||  |||||||||||||||  |    
24309193 aaaaagctaactaccacgaactgcacttcatccatcgaaaactgcttgtcccccacgtcttcaataagaaaactaactgctttttttgaattcaaatact 24309292  T
314 tttccttcga 323  Q
    || |||||||    
24309293 ttcccttcga 24309302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 25667236 - 25667188
Alignment:
172 tttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaa 221  Q
    ||||||||||| |||||||| |||||||||||||||| |||| |||||||    
25667236 tttttcatatggaaaactactatttatacatagtaaa-ataactgaaaaa 25667188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 356
Target Start/End: Original strand, 12145212 - 12145305
Alignment:
263 tgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattattttccttcgagaacaactgcttggcttcgaccaatcttctctc 356  Q
    ||||||||||||||| ||||| ||||| | ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||    
12145212 tgtcccccacgtcttcaatggcaaaaccgttgctttttgaattcaaattattttctttcgacaacatctgcttggcttcgaccaatcttgtctc 12145305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 27717978 - 27717858
Alignment:
123 aacgacggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaa 221  Q
    |||| ||||||||| ||||||||||||||||||||||||||  ||||| |||||||||||||||||||  |||||||||||||||| || | |  |||||    
27717978 aacgccggtacttcgagtgctagaattctataagtgatttgggaccta-tttttcatatgaaaaactaatatttatacatagtaaaaatgactaaaaaaa 27717880  T
222 gctaactgccacgatctgcact 243  Q
    |||||||||||||||| |||||    
27717879 gctaactgccacgatcagcact 27717858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 14132117 - 14132041
Alignment:
131 tacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaa 208  Q
    |||||||| ||||||||||||||||||||||||| ||||  |||| | ||||||||||||| ||||||||||||||||    
14132117 tacttcaactgctagaattctataagtgatttgcaacct-cttttccgtatgaaaaactactatttatacatagtaaa 14132041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 9101700 - 9101630
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttat 198  Q
    ||||||||| ||||||||| || |||||||||||||| || || |||||||||||||||||||| ||||||    
9101700 cggtacttcgagtgctagagttatataagtgatttgcgacatagtttttcatatgaaaaactactatttat 9101630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 53589117 - 53589043
Alignment:
129 ggtacttcaagtgctagaattctataagtgatttgccacctattttttcata-tgaaaaactaccatttatacata 203  Q
    |||||||| ||||||||||||||||||||||||||| ||| |||||||| || ||||||||||| || ||||||||    
53589117 ggtacttcgagtgctagaattctataagtgatttgcgacc-attttttcctaatgaaaaactactatatatacata 53589043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 12145106 - 12145157
Alignment:
138 agtgctagaattctataagtgatttgccacctattttttcatatgaaaaacta 190  Q
    ||||||||||||||||||||||||||| || || |||||||||||||||||||    
12145106 agtgctagaattctataagtgatttgcgacata-tttttcatatgaaaaacta 12145157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 48896134 - 48896284
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaa 226  Q
    |||| |||| ||||||| |||||||||| |||||||  || |  |||||| ||||||||||||  |||||||||||| | | ||||  | ||||||||||    
48896134 cggtgcttcgagtgctataattctataaatgatttgtgacatgatttttc-tatgaaaaactattatttatacatagaagaaataatcgtaaaaagctaa 48896232  T
227 -ctgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctt 277  Q
     |||||||||  ||||||| |||||||||||| | | |||||||||| ||||    
48896233 actgccacgagatgcactcattccatcgaaaactatttgtcccccacatctt 48896284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 44450873 - 44450798
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatag 204  Q
    ||||||||| |||||||||||| ||||| |||||||| |||| ||||||   |||||||||||  ||||||||||||    
44450873 cggtacttcgagtgctagaattttataaatgatttgcgacctctttttt-tcatgaaaaactattatttatacatag 44450798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 7536083 - 7535984
Alignment:
179 tatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaactgccacgatctgcactccttccatcgaaaattgtctgtcccccacgtctt 277  Q
    |||| |||||||  |||||||||||||||| |||| || ||||||||||||  |||||||  |||| | ||||||||||| ||  ||||||| |||||||    
7536083 tatgcaaaactattatttatacatagtaaaaataactggaaaaagctaactttcacgatcaacacttcctccatcgaaaactgcttgtcccctacgtctt 7535984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 314
Target Start/End: Original strand, 15759703 - 15759867
Alignment:
148 ttctataagtgatttgccacctattttttcatatgaa-aaactaccatttatacatagtaaatataaatgaaaaa--gctaactgccacgatctgcactc 244  Q
    |||||||| |||||||| ||| |||||  |||||||| ||||||| |||||||||||||||| |||| |||||||  ||||||| |||| |||  ||||     
15759703 ttctataaatgatttgcgacccattttc-catatgaataaactactatttatacatagtaaa-ataactgaaaaaaggctaactcccacaatcaacactt 15759800  T
245 cttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaattatt 314  Q
    |||||||   ||||||| ||||||| |||||||   || | |||| ||| | ||||||||||||||||||    
15759801 cttccat--taaattgtttgtcccctacgtcttcgttgtggaaaccgct-cattttgaattcaaattatt 15759867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 45279917 - 45279852
Alignment:
138 agtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatag 204  Q
    |||||||||||| |||||||||||||  |||  ||||||| ||||||||||||| || |||||||||    
45279917 agtgctagaattatataagtgatttgtgaccc-ttttttcttatgaaaaactactatatatacatag 45279852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 10276 - 10191
Alignment:
148 ttctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataa-atgaaaaagctaactgccac 233  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||    
10276 ttctataagtgatttgcgacctattttt-catatgaaaaactactatttatacatagtaaatataacttgaaaaagttaactgccac 10191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 6508 - 6593
Alignment:
148 ttctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaactgccac 233  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||| |||| | ||||||| ||||||||||    
6508 ttctataagtgatttgcgacctatttt-tcatatgaaaaactactatttatacatattaaaaataactggaaaaagttaactgccac 6593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 4953 - 4895
Alignment:
297 ttttgaattcaaattattttccttcgagaacaactgcttggcttcgaccaatcttctct 355  Q
    |||||||||  |||||||||||||||| |||||||||| | ||| ||||||||||||||    
4953 ttttgaatttgaattattttccttcgacaacaactgctcgactttgaccaatcttctct 4895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 26927 - 26842
Alignment:
124 acgacggtacttcaagtgct-agaatt-ctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaa 208  Q
    ||||||||||||| |||||| |||||| |||||| |||||||| ||| |||||  |||||| |||||||| ||||||||||||||||    
26927 acgacggtacttcgagtgcttagaatttctataaatgatttgcgacccattttc-catatggaaaactactatttatacatagtaaa 26842  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 51649 - 51570
Alignment:
128 cggtacttcaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaa 208  Q
    ||||||| | ||||||||||||||||||  ||||| | ||| |||||  |||||| |||||||| ||||||||||||||||    
51649 cggtactgcgagtgctagaattctataaacgatttacgacccattttc-catatggaaaactactatttatacatagtaaa 51570  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 38887 - 38816
Alignment:
148 ttctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaa 221  Q
    ||||||||||||||||  |||||||||  |||||| |||||||| |||||||||||| ||| |||| |||||||    
38887 ttctataagtgatttgtgacctattttc-catatggaaaactactatttatacatagcaaa-ataactgaaaaa 38816  T

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