View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_19 (Length: 368)
Name: NF0777_low_19
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 2833845 - 2833575
Alignment:
| Q |
1 |
tccatgaccactccaccccagttgttcagtttatagccaaattcaagctggataatgcaacagacaaatttcactagagttttttcaacagnnnnnnnnn |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2833845 |
tccatgaccactccaccccagttgttcagtttatagccaaattcaagctggataatgcaacagacaaatttcactagagttttttcaagagaaaaaaaa- |
2833747 |
T |
|
| Q |
101 |
gaactaaagagtttagatttttgcagtcaaaatccaaacctcaaacacatccaaaatatctcacacaaagatgtataaattgttacaagaagctcatagc |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2833746 |
gaactaaagagttcagatttttgcagtcaaaatccaaacctcaaatacatccaaaatatctcacacaaagatgtatacattgttacaagaagctcatagc |
2833647 |
T |
|
| Q |
201 |
ttacacttgaagcagagctactctctgctctacacctcactacaacttcatttggttacataatatggtaaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2833646 |
ttacacttgaagcagagctactctctgctctacacctcactacaacttcatttggttacataatatggtaaa |
2833575 |
T |
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