View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0777_low_21 (Length: 338)

Name: NF0777_low_21
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0777_low_21
NF0777_low_21
[»] chr2 (7 HSPs)
chr2 (37-184)||(25557788-25557936)
chr2 (37-116)||(4865477-4865555)
chr2 (1-39)||(25558086-25558124)
chr2 (59-137)||(37828446-37828523)
chr2 (80-137)||(4865682-4865739)
chr2 (80-137)||(29667569-29667626)
chr2 (37-108)||(34887855-34887924)
[»] chr7 (8 HSPs)
chr7 (37-137)||(1505543-1505643)
chr7 (49-137)||(23457411-23457499)
chr7 (49-137)||(23533269-23533357)
chr7 (37-137)||(23474929-23475029)
chr7 (71-137)||(23443335-23443401)
chr7 (80-136)||(2169266-2169322)
chr7 (69-137)||(23534133-23534201)
chr7 (89-138)||(25921030-25921081)
[»] chr5 (5 HSPs)
chr5 (37-137)||(17476169-17476268)
chr5 (59-126)||(7148294-7148360)
chr5 (59-137)||(38299728-38299804)
chr5 (62-137)||(38299874-38299953)
chr5 (91-139)||(41048646-41048694)
[»] chr1 (3 HSPs)
chr1 (49-139)||(27630998-27631088)
chr1 (81-139)||(51249165-51249223)
chr1 (49-137)||(42175252-42175340)
[»] chr3 (4 HSPs)
chr3 (37-138)||(30259605-30259706)
chr3 (80-134)||(30259865-30259919)
chr3 (80-128)||(38421258-38421306)
chr3 (51-107)||(52236576-52236632)
[»] chr6 (4 HSPs)
chr6 (40-136)||(34448430-34448526)
chr6 (37-137)||(1706803-1706903)
chr6 (82-139)||(5449483-5449541)
chr6 (81-138)||(4974690-4974747)
[»] chr4 (4 HSPs)
chr4 (37-116)||(53801506-53801585)
chr4 (37-137)||(12828554-12828655)
chr4 (76-137)||(52074897-52074958)
chr4 (49-116)||(26310235-26310300)
[»] chr8 (4 HSPs)
chr8 (80-137)||(13706217-13706274)
chr8 (50-137)||(1410698-1410783)
chr8 (97-137)||(1410470-1410510)
chr8 (58-137)||(29795754-29795833)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 25557936 - 25557788
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattt 135  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||| |||||| ||||||    
T  25557936 gttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatgggagtgagcgtttttttgttggaagaagagcaattt 25557837  T
Q  136 tcaatatgagtatatactactcgcattgccatatttgggtcacaggttc 184  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  25557836 ttaatatgagtatatactactcgcattgccatatttgggtcacaggttc 25557788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 4865555 - 4865477
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 116  Q
    ||||||||| | |||||| || |||||||||| ||||||||| |||||||||| ||||| |||| |||||||||||||||    
T  4865555 gttatacttcagcttaccaaacgtgagttaactcacgtgggg-gtattttggtaagtttgtatgagagtgaacgtttttt 4865477  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25558124 - 25558086
Alignment:
Q  1 tatttgtgttttaggggatttaattacctatttgttgtt 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25558124 tatttgtgttttaggggatttaattacctatttgttgtt 25558086  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 37828523 - 37828446
Alignment:
Q  59 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    |||||||||| |||| | || |||||||||||||||| |||| |||||| |||||||| ||||||||||| ||||||||    
T  37828523 gtgagttaactcacgcgagg-gtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 4865682 - 4865739
Alignment:
Q  80 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||| ||| ||||||||    
T  4865682 gtattttggtcagtttgtatgggagtgaacattttttgttgggaggagagcaattttc 4865739  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 29667626 - 29667569
Alignment:
Q  80 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    ||||||| || ||||| |||||||||||||| ||||||||||| ||||| || |||||    
T  29667626 gtatttttgttagtttgtatgggagtgaacgatttttattgggtgaagagcagttttc 29667569  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 34887924 - 34887855
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaa 108  Q
    ||||||||| | |||| |||| |||| ||||| |||||||||  ||||||||| ||||| ||||||||||||    
T  34887924 gttatacttcagcttatcgaacgtgaattaactcacgtgggg--tattttggttagtttgtatgggagtgaa 34887855  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 1505643 - 1505543
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 136  Q
    ||||||||| | |||| ||||||||||||||| ||| ||| | ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||    
T  1505643 gttatacttcagcttatcgaatgtgagttaactcacatggagggtattttggtcggtttatatgggagtaaacgttttttgttgggagaagagcaatttt 1505544  T
Q  137 c 137  Q
    |    
T  1505543 c 1505543  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 23457411 - 23457499
Alignment:
Q  49 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    |||||| ||||||||||||| |||||||   |||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||    
T  23457411 cttaccaaatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagtgagcgttttttgtttggagaagaacaattttc 23457499  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 23533357 - 23533269
Alignment:
Q  49 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    |||||| || |||||||||| ||||||| | |||||||||| ||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  23533357 cttaccaaacgtgagttaactcacgtggtgggtattttggtaagtttttatgggagtgagcattttttgttgggagaagaacaattttc 23533269  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 23475029 - 23474929
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 136  Q
    ||||||||| | |||||| || |||||||||| ||| ||| | |||||||||| | ||| |||||||| || |||||||| |||||||||||||||||||    
T  23475029 gttatacttcaacttaccaaacgtgagttaactcacatggagggtattttggtaaatttttatgggagagagcgttttttgttgggagaagaacaatttt 23474930  T
Q  137 c 137  Q
    |    
T  23474929 c 23474929  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 23443401 - 23443335
Alignment:
Q  71 acgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    |||||| | |||||||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  23443401 acgtggagggtattttgataagtttttatgggagtgagcgttttttgttgggagaagaacaattttc 23443335  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 2169266 - 2169322
Alignment:
Q  80 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 136  Q
    |||||||| || |||| ||||||||||| |||||||| ||||||||||| |||||||    
T  2169266 gtattttgatcggtttgtatgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 23534133 - 23534201
Alignment:
Q  69 acacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    |||||||| | ||||||| || ||||| |||| |||||| | |||||| ||||||||||| ||||||||    
T  23534133 acacgtggcgggtatttttgttagtttgtatgagagtgagcattttttgttgggagaagagcaattttc 23534201  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 25921081 - 25921030
Alignment:
Q  89 tcagtttatatgggagtgaacgtt--ttttattgggagaagaacaattttca 138  Q
    ||||||| ||||||||||||||||  |||| ||||| |||||||||||||||    
T  25921081 tcagtttgtatgggagtgaacgttttttttgttgggtgaagaacaattttca 25921030  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 17476169 - 17476268
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 136  Q
    ||||||||||| ||||||||| | |||||||| ||||||| | |||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  17476169 gttatactttagcttaccgaacgcgagttaactcacgtggag-gtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaatttt 17476267  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 7148360 - 7148294
Alignment:
Q  59 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaa 126  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||| | |||||| |||||||||    
T  7148360 gtgagttaactcacgtagggagtattttggtcagtttgtatgggagtgagc-ttttttgttgggagaa 7148294  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 38299804 - 38299728
Alignment:
Q  59 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    |||||||||| |||| ||| |||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  38299804 gtgagttaactcacgcggg-agtattttagtcagtttgtatgggagtgaacgtctttt-ttgggagaagagcaattttc 38299728  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 38299874 - 38299953
Alignment:
Q  62 agttaacacacgtggggagtattttggtcagttta-----tatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    ||||||| ||||||||  |||||||||||||||||     |||| |||||| |||||||| ||||||||||| ||||||||    
T  38299874 agttaactcacgtgggc-gtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 38299953  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 41048694 - 41048646
Alignment:
Q  91 agtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 139  Q
    ||||| ||||||||||  |||||||| ||||||||||| ||||||||||    
T  41048694 agtttgtatgggagtgtgcgttttttgttgggagaagagcaattttcaa 41048646  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 27631088 - 27630998
Alignment:
Q  49 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 139  Q
    ||||||||| |||||||||| ||||||||  || |||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||||    
T  27631088 cttaccgaacgtgagttaactcacgtgggatgtgttttagtcagtttatatgggagtgagcgttttttgttgggagaagagctattttcaa 27630998  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 51249223 - 51249165
Alignment:
Q  81 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 139  Q
    |||||| ||||||||||||| ||||| |||| |||| ||||||||||| ||||||||||    
T  51249223 tattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttcaa 51249165  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 42175252 - 42175340
Alignment:
Q  49 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    ||||||||  |||||||||| ||||||| |  ||||| | || |||| |||||||||||  ||||||| ||||||||||| ||||||||    
T  42175252 cttaccgagcgtgagttaactcacgtggaggatatttcgatcggtttgtatgggagtgagtgttttttgttgggagaagagcaattttc 42175340  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 30259706 - 30259605
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 136  Q
    ||||||||| |||| |||||| |||||||||| ||||||  |||||||||||||||||| ||||  ||||| |||||||| ||||| ||||  |||||||    
T  30259706 gttatacttcatctgaccgaacgtgagttaactcacgtgacgagtattttggtcagtttgtatgaaagtgatcgttttttgttgggtgaagcgcaatttt 30259607  T
Q  137 ca 138  Q
    ||    
T  30259606 ca 30259605  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 30259865 - 30259919
Alignment:
Q  80 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatt 134  Q
    |||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||    
T  30259865 gtattttgatcagtttgtatgggagtgagcgttttttgttgggagaagagcaatt 30259919  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 38421306 - 38421258
Alignment:
Q  80 gtattttggtcagtttatatgggagtgaacgttttttattgggagaaga 128  Q
    |||||||| ||||||||||||||||| | |||||||| | |||||||||    
T  38421306 gtattttgatcagtttatatgggagtaagcgttttttgtcgggagaaga 38421258  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 52236576 - 52236632
Alignment:
Q  51 taccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtga 107  Q
    |||||||||||||||||| ||  | | ||||||||||||||||| || |||||||||    
T  52236576 taccgaatgtgagttaactcaaattgagagtattttggtcagttcatgtgggagtga 52236632  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 34448430 - 34448526
Alignment:
Q  40 atactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 136  Q
    |||||| | |||||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||  ||||||| || |||||||| |||||||    
T  34448430 atacttcagcttaccaaacgtgagctaacacacgtggggggtattttggtcagtttgtatgggcgtgagtgttttttgtttggagaagagcaatttt 34448526  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 1706803 - 1706903
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 136  Q
    ||||||||| | |||||||||  ||||||||| ||||||| | ||| |||| |||||||||||| |||||||  |||||| ||||||||||| || ||||    
T  1706803 gttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgaatcttttttgttgggagaagagcagtttt 1706902  T
Q  137 c 137  Q
    |    
T  1706903 c 1706903  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 5449541 - 5449483
Alignment:
Q  82 attttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttcaa 139  Q
    |||||||||||||| |||||||||||||| |||||| || |||||||| ||||||||||    
T  5449541 attttggtcagtttgtatgggagtgaacgcttttttgtttggagaagagcaattttcaa 5449483  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 4974747 - 4974690
Alignment:
Q  81 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttca 138  Q
    ||||||||||||||| ||||| ||||| |||||||| ||  ||||||| |||||||||    
T  4974747 tattttggtcagtttgtatggaagtgagcgttttttgttaagagaagagcaattttca 4974690  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 53801506 - 53801585
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 116  Q
    ||||||||| | |||| |||| |||||||||| ||||||| |||||||||||||||||| | || |||||||||||||||    
T  53801506 gttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgtttgagagtgaacgtttttt 53801585  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 12828554 - 12828655
Alignment:
Q  37 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt-attgggagaagaacaattt 135  Q
    ||||||||| ||||||||||| |||||||||| |||||| |   ||||||||||||||| |||| |||||||| ||||||  |||||||||||  |||||    
T  12828554 gttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttggtcagtttgtatgagagtgaacattttttggttgggagaagagaaattt 12828653  T
Q  136 tc 137  Q
    ||    
T  12828654 tc 12828655  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 52074897 - 52074958
Alignment:
Q  76 gggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    ||||||||||||||| || ||||||| ||||| ||||||||| || ||||||| ||||||||    
T  52074897 gggagtattttggtcggtctatatggaagtgagcgttttttactgagagaagagcaattttc 52074958  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 26310300 - 26310235
Alignment:
Q  49 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 116  Q
    ||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||||| | ||||||    
T  26310300 cttactgaatgtgagttaattca--tgcggagtattttggtcagtttgtatgggagtgagcatttttt 26310235  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 13706217 - 13706274
Alignment:
Q  80 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    |||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||||||    
T  13706217 gtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 1410698 - 1410783
Alignment:
Q  50 ttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    ||||||||  ||||||||| ||||||| | |||||||| | ||||||||||| |||||  ||||||| ||||||||||| ||||||||    
T  1410698 ttaccgaacatgagttaactcacgtggag-gtattttgattagtttatatggcagtgagtgtttttt-ttgggagaagagcaattttc 1410783  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 1410510 - 1410470
Alignment:
Q  97 tatgggagtgaacgttttttattgggagaagaacaattttc 137  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  1410510 tatggaagtgaacgttttttgttggaagaagaacaattttc 1410470  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 29795833 - 29795754
Alignment:
Q  58 tgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttc 137  Q
    ||||||||||| |||| || | |||||||||||||||| |||| |||| |||| |||||| ||| ||||||| ||||||||    
T  29795833 tgtgagttaactcacgcggag-gtattttggtcagtttgtatgagagtaaacgtttttttgttgagagaagagcaattttc 29795754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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