View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0777_low_22 (Length: 336)

Name: NF0777_low_22
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0777_low_22
NF0777_low_22
[»] chr7 (8 HSPs)
chr7 (69-336)||(26617742-26618001)
chr7 (69-209)||(39865471-39865611)
chr7 (69-260)||(33190303-33190494)
chr7 (133-260)||(14719370-14719501)
chr7 (109-260)||(7578536-7578687)
chr7 (77-158)||(14719287-14719367)
chr7 (96-157)||(37479556-37479617)
chr7 (142-260)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (76-260)||(52311220-52311404)
chr4 (69-236)||(54687660-54687826)
chr4 (85-230)||(20275938-20276082)
chr4 (100-260)||(5350929-5351089)
chr4 (69-230)||(26997226-26997387)
chr4 (69-236)||(54678540-54678709)
chr4 (72-257)||(17365674-17365858)
chr4 (69-230)||(26992029-26992193)
chr4 (69-160)||(6408036-6408126)
chr4 (73-159)||(22746635-22746721)
chr4 (98-260)||(27360193-27360354)
chr4 (69-260)||(12746524-12746715)
chr4 (69-122)||(14000179-14000230)
chr4 (135-257)||(18902113-18902234)
chr4 (71-122)||(13994875-13994924)
chr4 (134-190)||(20355099-20355155)
[»] chr5 (8 HSPs)
chr5 (69-260)||(16633256-16633446)
chr5 (69-230)||(19779955-19780116)
chr5 (76-230)||(19479453-19479607)
chr5 (133-260)||(17604690-17604821)
chr5 (69-230)||(19783203-19783363)
chr5 (96-158)||(17604824-17604886)
chr5 (217-260)||(21575046-21575089)
chr5 (168-260)||(35105030-35105122)
[»] chr1 (6 HSPs)
chr1 (69-237)||(40274361-40274530)
chr1 (69-230)||(40279150-40279311)
chr1 (69-239)||(29530120-29530291)
chr1 (75-239)||(29547775-29547940)
chr1 (96-259)||(28201654-28201817)
chr1 (109-191)||(27417427-27417509)
[»] chr3 (7 HSPs)
chr3 (68-182)||(8832532-8832646)
chr3 (69-194)||(39875817-39875940)
chr3 (69-181)||(44126711-44126823)
chr3 (138-260)||(21587185-21587306)
chr3 (69-120)||(13921708-13921757)
chr3 (144-260)||(20458819-20458933)
chr3 (187-260)||(20463226-20463299)
[»] chr2 (3 HSPs)
chr2 (96-260)||(19912279-19912443)
chr2 (183-260)||(34111054-34111131)
chr2 (134-256)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (73-159)||(17909890-17909977)
chr8 (81-127)||(10739137-10739183)
chr8 (73-127)||(15007178-15007231)
chr8 (69-123)||(36911929-36911983)
chr8 (79-160)||(10734068-10734149)
chr8 (83-207)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (69-120)||(23599935-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (69-122)||(16258-16311)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 69 - 336
Target Start/End: Original strand, 26617742 - 26618001
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  |||||||||||    
T  26617742 agaagaggaagaagaagatgaaaacactttgtattattctcttcacaagtgtgtctttacaattcaatatgagccctatttataggattcaagatgaata 26617841  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaatccactaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  26617842 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatgga--------aatccactaa 26617933  T
Q  269 gttaattattcataacaaattttaagttttctcatcacattagaaaatagaggttgttgcattcatca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617934 gttaattattcataacaaattttaagttttctcatcacattagaaaatagaggttgttgcattcatca 26618001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 39865611 - 39865471
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||| | ||||||| ||||||||||| ||||||||||| ||    
T  39865611 agaagaggaaggagaagatgaaagcactttgtattattctcttcaagagtgtgtctttgcaatacgatatgagccctatttatagtacacaagatgagta 39865512  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcact 209  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  39865511 agtgagtgatcaagacaattaaggtccactaactattcact 39865471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 260
Target Start/End: Original strand, 33190303 - 33190494
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||| |||||  ||||||||||| ||    
T  33190303 agaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatatgagaccta-ttataatacacaagatgagta 33190401  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagac-taaggatggaaatccactaa 260  Q
    ||||||||||||||  || ||||||||| |||||||||||| |  |||||   ||||||||| ||||||||| |||||||| | |||||||||    
T  33190402 agtgagtgatcaaggcaactaaggtccagtaactattcacttaccaatggaaattataggaaggtgaaagacttaaggatgtacatccactaa 33190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 14719370 - 14719501
Alignment:
Q  133 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 228  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  14719370 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 14719469  T
Q  229 aaagtgaaagactaaggatggaaatccactaa 260  Q
    || ||| ||||||||||| ||| |||||||||    
T  14719470 aaggtggaagactaaggacggacatccactaa 14719501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 7578687 - 7578536
Alignment:
Q  109 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcac 208  Q
    |||| |||||||||||||| | |  |||||||||||||||||||||| |||| || |  |||||| |||||||  ||||||||| ||||| || || ||     
T  7578687 cttctcaagtgtgtctttatactataatatgagtcctatttataggatacaatataagcaagtgaatgatcaaagtaattaaggaccactgaccatccat 7578588  T
Q  209 tcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    ||| | |||||  |||| |||| ||| ||||||||||||||| |||||||||    
T  7578587 tcacttatgggacttatgggaaggtggaagactaaggatggacatccactaa 7578536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 14719287 - 14719367
Alignment:
Q  77 aagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 158  Q
    |||||||||||||||||  ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  14719287 aagaagaagatgaaagct-tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 14719367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 37479556 - 37479617
Alignment:
Q  96 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggaca 157  Q
    ||||||||||||||||||||| ||| |||||| | | ||||||  |||||||||||||||||    
T  37479556 tttgtattattctcttcacaaatgtttctttacattgcaatataggtcctatttataggaca 37479617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 260
Target Start/End: Original strand, 35339023 - 35339141
Alignment:
Q  142 tcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagact 241  Q
    |||||||||||||| |||| ||||  | ||||   |||||  ||||||||| ||| |||| || || ||| | ||||| |||||||||| ||| ||||||    
T  35339023 tcctatttataggatacaatatgagcatgtgaaatatcaaagtaattaaggaccattaaccatccattcacttatgggagttataggaaggtggaagact 35339122  T
Q  242 aaggatggaaatccactaa 260  Q
    || |||||| |||||||||    
T  35339123 aatgatggacatccactaa 35339141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 260
Target Start/End: Original strand, 52311220 - 52311404
Alignment:
Q  76 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 175  Q
    |||||||| ||||||| || ||||||||||||||||||||| |||||||||| | | |||||||| |||||||||||||||||||||||| |||||||||    
T  52311220 gaagaagatgatgaaaacattttgtattattctcttcacaaatgtgtctttacactgcaatatgaatcctatttataggacacaagatgactaagtgagt 52311319  T
Q  176 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    ||||||   |||||||||||||||||||||||||||  ||| ||||||||||||| ||| ||||||| ||||||| || ||||||    
T  52311320 gatcaaagaaattaaggtccactaactattcactcaccaataggggttataggaaggtggaagactagggatggacattcactaa 52311404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 54687660 - 54687826
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||  ||||||||||| | ||||||||| ||    
T  54687660 agaagaggaaggagaagatgaaatcactttgtattattctcttcacaagtgtatctttataatacaatatgaaccctatttatagtatacaagatgagta 54687759  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 236  Q
    ||| ||||||||||| |||| |||||| |||| |||||||| | |||| |||||||||||||||||||    
T  54687760 agtaagtgatcaagaaaattgaggtcccctaattattcacttactaat-ggggttataggaaagtgaa 54687826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 20276082 - 20275938
Alignment:
Q  85 gatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagat 184  Q
    ||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||      
T  20276082 gatgaaagc-ctttgtattattctgttcacatgtgtgtctttacaatacaatatgagtcctatttatagtacataagatgagtaagtgagtgatcaaggc 20275984  T
Q  185 aattaaggtccactaactattcactcattaatgggggttataggaa 230  Q
    | ||||||||||||||||||||||| | ||||||  ||||||||||    
T  20275983 agttaaggtccactaactattcacttactaatggaagttataggaa 20275938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 100 - 260
Target Start/End: Complemental strand, 5351089 - 5350929
Alignment:
Q  100 tattattctcttcacaagtgtgtctttag-aattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccact 198  Q
    ||||||||| |||||||||||||||||   |||  ||||||||||||||||||||||||||| |||| |||||| | |||||| ||||||||||||| ||    
T  5351089 tattattctattcacaagtgtgtctttttcaataaaatatgagtcctatttataggacacaaaatgagtaagtg-gcgatcaaaataattaaggtccgct 5350991  T
Q  199 aactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    ||||||||||||  |||||| | ||||||||| ||| ||||||||||||||| |||||||||    
T  5350990 aactattcactcgctaatggagattataggaaggtggaagactaaggatggacatccactaa 5350929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 26997387 - 26997226
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  |||  |||||||||||||||||||| ||||||||||| ||    
T  26997387 agaagagaaaggagaagatgaaagcactttgtattattctcttcacaagtatgtctttgcaatataatatgagtcctatttatagtacacaagatgagta 26997288  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 230  Q
    ||| |||| ||||    |||||||| |||| |||||||||| | ||||| | ||||||||||    
T  26997287 agttagtgttcaaagctattaaggttcactgactattcacttactaatgagagttataggaa 26997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 54678540 - 54678709
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||  || |||||| |||  |||||||||||||||||||  ||||||||||| ||    
T  54678540 agaagaggaaggagaagatgaaaacactttttattattctcttcacaaacgtatctttacaatataatatgagtcctatttataatacacaagatgagta 54678639  T
Q  169 agt--gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 236  Q
    |||  | ||||||||   ||||||||||||| ||||||||||| | ||| |||||||||||||| |||||    
T  54678640 agtaagtgtgatcaatgaaattaaggtccaccaactattcacttaataacgggggttataggaaggtgaa 54678709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 17365858 - 17365674
Alignment:
Q  72 agaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagt 171  Q
    |||||||||||| | ||||| || ||||||||||| | |||||||  || |||||| | |  |||| ||| | ||||||||||||||||||||| |||||    
T  17365858 agaggaagaagatggtgaaaacattttgtattattttgttcacaaaggtttctttacactataata-gagccttatttataggacacaagatgagtaagt 17365760  T
Q  172 gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccac 257  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||  ||||||| |||| || ||||||||||||| | ||||||    
T  17365759 gagtgatcaaagaaattaaggtccactaactattcactcactaatgaaggttataagaaaatggaagactaaggatgaacatccac 17365674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 26992193 - 26992029
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattatt---ctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatga 165  Q
    ||||||||||  |||||||||||| |||||||||||||   |||||||||||| | |||||  |||  |||||||| ||||||||||| ||||  |||||    
T  26992193 agaagaggaaagagaagatgaaagtactttgtattattattctcttcacaagtatatctttgcaatataatatgagccctatttatagtacacgggatga 26992094  T
Q  166 ataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 230  Q
    |||||| ||||||||||  ||||||||||||||||||||||||| | ||||| |  |||||||||    
T  26992093 ataagttagtgatcaaggcaattaaggtccactaactattcacttactaatgagatttataggaa 26992029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 6408126 - 6408036
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 160  Q
    |||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||   | ||||||  ||||||||||||||||||||    
T  6408126 agaagaagaagaagaagatgaaag-attttgtattattctcttcacaagtgtgcctttactttgcaatataggtcctatttataggacacaa 6408036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 22746721 - 22746635
Alignment:
Q  73 gaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacaca 159  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||| | |  ||| |  |||||||||||||||||||    
T  22746721 gaggaggaagaagatgaaagtactttgtattattctcttcacaagggtgtcattacattgtaatgtaggtcctatttataggacaca 22746635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 27360354 - 27360193
Alignment:
Q  98 tgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccac 197  Q
    ||||||||| | |||||||| ||||||||| | |  ||||  |||||||||||||||| |||| ||||| |||||| |||||||  ||||||||| ||||    
T  27360354 tgtattatttttttcacaagcgtgtctttacactataatacaagtcctatttataggatacaatatgaacaagtgaatgatcaaagtaattaaggaccac 27360255  T
Q  198 taactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    |||| ||  | ||||| || || |||||||||| ||| |||||||  |||| | |||||||||    
T  27360254 taaccatctattcatttat-ggagttataggaaggtggaagactactgatgaacatccactaa 27360193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 260
Target Start/End: Original strand, 12746524 - 12746715
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaat 167  Q
    ||||||||| |||||||||||||| |  |||||||||||| |||| ||||||||| || | | |  |||||  || ||||||||||||| ||| ||||      
T  12746524 agaagaggaggaagaagatgaaagtatattgtattattcttttcataagtgtgtcattcacattataatataggttctatttataggacgcaa-atgagc 12746622  T
Q  168 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    |||||| |||||||  | ||||||| ||| ||| ||| || ||| |||| | ||||||||||| ||| |||| | |||||||| |||||||||    
T  12746623 aagtgaatgatcaaagtcattaaggaccattaagtatacattcactaatagtggttataggaaggtggaagattgaggatggacatccactaa 12746715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 14000230 - 14000179
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 122  Q
    ||||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  14000230 agaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 14000179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 18902113 - 18902234
Alignment:
Q  135 atatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtg 234  Q
    |||||||||  ||||||||||||||| ||||  ||||||  |||||| | |||||||| ||| |||  || || ||| |||||| ||||||||||| |||    
T  18902113 atatgagtcagatttataggacacaa-atgagcaagtgaaagatcaaaacaattaaggaccattaagcatccattcactaatggaggttataggaaggtg 18902211  T
Q  235 aaagactaaggatggaaatccac 257  Q
    ||||| |||||||| | ||||||    
T  18902212 aaagattaaggatgaacatccac 18902234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 13994924 - 13994875
Alignment:
Q  71 aagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 122  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  13994924 aagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 13994875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 20355099 - 20355155
Alignment:
Q  134 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaa 190  Q
    |||||||||||||||||||||| |||| ||||| || ||| |||||||  |||||||    
T  20355099 aatatgagtcctatttataggatacaatatgaacaactgaatgatcaaagtaattaa 20355155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 69 - 260
Target Start/End: Original strand, 16633256 - 16633446
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    |||||| ||||| || ||||||| |  ||| |||||||||||||||||| ||||||||  ||| ||||||||| ||||||||||||||||||| ||| ||    
T  16633256 agaagaagaagatgatgatgaaaaccttttatattattctcttcacaagcgtgtctttgcaatacaatatgagccctatttataggacacaagttgagta 16633355  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    ||||| |||||||  |||||||||||||||||||||||||||  |||| ||||||||||||| ||| ||||||||||||||| |||||||||    
T  16633356 agtgaatgatcaaagtaattaaggtccactaactattcactcgctaat-ggggttataggaaggtggaagactaaggatggacatccactaa 16633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 19779955 - 19780116
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||  |||||||||||  ||| ||||||||| ||||||||||| |||||||| || ||    
T  19779955 agaagaggaatgagaagataaaagcactttgtattattctcttcaagagtgtgtctttgtaatacaatatgagccctatttatagtacacaagacgagta 19780054  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 230  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19780055 agtgagtgatcaaggtaattaaggtccactaactattcacttactaatgagagttataggaa 19780116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 19479453 - 19479607
Alignment:
Q  76 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 175  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||| |||||| || ||||||||||| ||||||||||| |||| ||||    
T  19479453 gaagaagaagatgaaagaactttgtattattctctttataagtgtgtctttacaatacaatataagccctatttatagtacacaagatgagtaagcgagt 19479552  T
Q  176 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 230  Q
    |||||||  ||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19479553 gatcaaggcaattaaggtccactaactattcacttactaatgagagttataggaa 19479607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 17604821 - 17604690
Alignment:
Q  133 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 228  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  17604821 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 17604722  T
Q  229 aaagtgaaagactaaggatggaaatccactaa 260  Q
    || ||| ||||||||||||||| |||||||||    
T  17604721 aaggtggaagactaaggatggacatccactaa 17604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 19783203 - 19783363
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||||  ||||||||||| | || |||||||||  |||||||||| ||||||||||| ||    
T  19783203 agaagagaaaggagaagataaaagcactttgtattattctcttcaagagtgtgtcttt-gcatacaatatgagcactatttatagtacacaagatgagta 19783301  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 230  Q
    |||||||||| ||   ||||||| ||||||||||||||||| | ||||| | ||||||||||    
T  19783302 agtgagtgatgaaagcaattaagttccactaactattcacttactaatgagagttataggaa 19783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 17604886 - 17604824
Alignment:
Q  96 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 158  Q
    ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  17604886 tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 17604824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 21575046 - 21575089
Alignment:
Q  217 gggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||    
T  21575046 gggggttataggaaggtggaagactaaggatggacatccactaa 21575089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 35105122 - 35105030
Alignment:
Q  168 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    |||||| |||||||  |||||||||  ||||||| || || ||| | ||||| ||||| | || ||| ||||||||||||||| |||||||||    
T  35105122 aagtgaatgatcaaagtaattaaggatcactaaccatccattcacttatgggagttattgcaaggtgtaagactaaggatggacatccactaa 35105030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 40274361 - 40274530
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| || ||||||||||  ||||||||||| ||    
T  40274361 agaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatattagccctatttataatacacaagatgagta 40274460  T
Q  169 agtgagtgatcaagataattaaggtccactaacta-ttcactcattaatgggggttataggaaagtgaaa 237  Q
    ||||||||||||||  |||||| |||||||||||| |||||| | ||||||| |||||| ||| ||||||    
T  40274461 agtgagtgatcaaggcaattaaagtccactaactatttcacttactaatgggagttataagaaggtgaaa 40274530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 40279150 - 40279311
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    ||||||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||||  ||| ||||||||  ||||||||||| ||||||||||| ||    
T  40279150 agaagagaaaggagaagatgaaaacactttatattattctcttcacaaatgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgagta 40279249  T
Q  169 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 230  Q
    ||||||||||||||  ||||||||||||||||||||||||| | ||||||| ||||||||||    
T  40279250 agtgagtgatcaaggcaattaaggtccactaactattcacttactaatgggagttataggaa 40279311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 29530291 - 29530120
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattct-cttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatgaa 166  Q
    |||||||||||||| |||||||| ||||||||||||||||  ||  |||||||| |||||| | | ||||||  |||||||||||| ||||||| ||||     
T  29530291 agaagaggaagaaggagatgaaaacactttgtattattctatttttcaagtgtgttctttacattacaatataggtcctatttatatgacacaa-atgag 29530193  T
Q  167 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 239  Q
     |||||| |||||||   |||||||| |||||||| || || | | | |||||| ||| ||||||||| ||||    
T  29530192 caagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgatggggtttacaggaaagtggaaga 29530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 29547940 - 29547775
Alignment:
Q  75 ggaagaagaagatgaaagcactttgtattattctc-ttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatgaataagtg 172  Q
    |||||||||||||||||  | |||||||||||||| ||  |||||||| |||||| | | ||||||  ||||||||||||||||| || ||||  |||||    
T  29547940 ggaagaagaagatgaaaatattttgtattattctctttttcaagtgtgttctttacattacaatataggtcctatttataggacataa-atgagcaagtg 29547842  T
Q  173 agtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 239  Q
    | |||||||   |||||||| |||||||| || || | | |||||||| ||||||||| ||| ||||    
T  29547841 aatgatcaaacaaattaaggaccactaaccatgcatttactaatggggattataggaaggtggaaga 29547775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 28201654 - 28201817
Alignment:
Q  96 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtcc 195  Q
    |||||| ||||||||| |||||||||   ||| | |  |||||||||| ||||||||||||| || ||||| |||||| | |||||   |||||| | |     
T  28201654 tttgtactattctctttacaagtgtgctattacattaaaatatgagtcatatttataggacataa-atgaacaagtgaattatcaaagcaattaaagact 28201752  T
Q  196 actaactattcactcattaatgg-gggttataggaaagtgaaagactaaggatggaaatccacta 259  Q
    |||||| || || ||| |||||| |||||||||||| ||| ||||  ||||||||| ||||||||    
T  28201753 actaaccatacattcactaatggagggttataggaaggtggaagataaaggatggacatccacta 28201817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 27417427 - 27417509
Alignment:
Q  109 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaag 191  Q
    |||| |||||||||||||| | |  |||| |||||||||||||| || |||| |||| ||||||| |||||||  ||||||||    
T  27417427 cttctcaagtgtgtctttacattataatacgagtcctatttataagatacaatatgagtaagtgaatgatcaaattaattaag 27417509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 8832532 - 8832646
Alignment:
Q  68 gagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 167  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||||  | |||||||||  ||| ||||||||  ||||||||||| ||||||||||| |    
T  8832532 gagaagaggaaggagaggatgaaatcactttgtattattctcttcaagactgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgagt 8832631  T
Q  168 aagtgagtgatcaag 182  Q
    |||||||||||||||    
T  8832632 aagtgagtgatcaag 8832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 39875940 - 39875817
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 168  Q
    |||| |||| |||||||||||||| | ||||||||  |||||||||||||||||||||  ||| ||||| |||   ||||||||| ||||||||||| ||    
T  39875940 agaaaaggaggaagaagatgaaagtaatttgtatt--tctcttcacaagtgtgtctttgcaatacaataggagctttatttatagtacacaagatgagta 39875843  T
Q  169 agtgagtgatcaagataattaaggtc 194  Q
    ||||||||||||||  ||||||||||    
T  39875842 agtgagtgatcaaggcaattaaggtc 39875817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 44126711 - 44126823
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaat 167  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || | | | ||||||  |||||||||||||||||||| ||||      
T  44126711 agaagagaaagaagaagatgaaagtactttgtattattctcttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaa-atgagc 44126809  T
Q  168 aagtgagtgatcaa 181  Q
    |||||| |||||||    
T  44126810 aagtgaatgatcaa 44126823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 21587185 - 21587306
Alignment:
Q  138 tgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaa 237  Q
    ||||||||||||||||||||||| ||||  |||||| |||||||   | ||||||  ||||||| || |  ||| |||||||||||||||||| ||| ||    
T  21587185 tgagtcctatttataggacacaa-atgagcaagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaa 21587283  T
Q  238 gactaaggatggaaatccactaa 260  Q
    || ||||| |||| | |||||||    
T  21587284 gattaagggtggacacccactaa 21587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 13921757 - 13921708
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 120  Q
    ||||||||||||||| |||||||||  ||||| |||||||||||||||||||    
T  13921757 agaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgt 13921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 20458819 - 20458933
Alignment:
Q  144 ctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaa 243  Q
    ||||||||||| ||||| ||||  |||||| ||||||| | | ||||||| ||||||| |  || ||| |||||||| ||||||||| ||| |||| |||    
T  20458819 ctatttataggtcacaa-atgagcaagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaatgggg-ttataggaaggtggaagattaa 20458916  T
Q  244 ggatggaaatccactaa 260  Q
    ||||||| |||||||||    
T  20458917 ggatggacatccactaa 20458933  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 20463226 - 20463299
Alignment:
Q  187 ttaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    ||||||||||||||| || || ||| |||| ||| ||||||||| | | ||||||||| ||||| |||||||||    
T  20463226 ttaaggtccactaaccatacattcactaatagggattataggaaggaggaagactaagaatggacatccactaa 20463299  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 19912443 - 19912279
Alignment:
Q  96 tttgtattattctcttcacaagtgtgtctttagaattc-aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtc 194  Q
    ||||||||||||||||||||||||| | |||   |||  |||||  |||||||||||||||||||| ||||  ||||||||||||||   |||||||| |    
T  19912443 tttgtattattctcttcacaagtgtatattttacattataatataggtcctatttataggacacaa-atgagcaagtgagtgatcaaagcaattaaggac 19912345  T
Q  195 cactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
     |||||| || || ||| |||| ||||||||||||| ||| |||| ||||| |||| |||||||||    
T  19912344 tactaaccatacattcaataataggggttataggaaggtggaagattaagggtggacatccactaa 19912279  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 34111054 - 34111131
Alignment:
Q  183 ataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 260  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||| ||| | || |||||||||| |||||||||    
T  34111054 ataattaaggtccactaactattcactcactaatgcgagttataggaaggtggatgattaaggatggacatccactaa 34111131  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 45276475 - 45276354
Alignment:
Q  134 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagt 233  Q
    ||||||||||||||||||||||||||| |||| ||||||| || |||| |  ||||||| |||||||| || || ||| |||   |||||||||||| ||    
T  45276475 aatatgagtcctatttataggacacaa-atgagtaagtgaatggtcaaaactattaaggaccactaaccatacattcactaacatgggttataggaaggt 45276377  T
Q  234 gaaagactaaggatggaaatcca 256  Q
    | ||||  | ||||||| |||||    
T  45276376 ggaagatgagggatggacatcca 45276354  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 17909977 - 17909890
Alignment:
Q  73 gaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacaca 159  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||| | |   |||| ||||||||||||||||||||    
T  17909977 gaggaaggagaagatgaaagtactttgtattattctcttctcaagtgtgttctttacattgagatataagtcctatttataggacaca 17909890  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 10739183 - 10739137
Alignment:
Q  81 agaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 127  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||    
T  10739183 agaagatgaaagcactttgtattattctcttcacaagtatatcttta 10739137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 15007231 - 15007178
Alignment:
Q  73 gaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 127  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15007231 gaggaaggagaagatgaaagcactttgtatta-tctcttcaccagtgtgtcttta 15007178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 36911929 - 36911983
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc 123  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  36911929 agaagaggaagaagaaggtgaaaacactttttattattctcttcagaagtgtgtc 36911983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 10734149 - 10734068
Alignment:
Q  79 gaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 160  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||| |   |||| |  ||||||||||||||| ||||    
T  10734149 gaagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgacaatgtaggtcctatttataggatacaa 10734068  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 12145639 - 12145764
Alignment:
Q  83 aagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtccta-tttataggacacaagatgaataagtgagtgatcaa 181  Q
    |||||||||||  | |||||||| ||||||| |||||||| |||| | |   | ||||||| || |||||||||||||| ||||  ||||||||||||||    
T  12145639 aagatgaaagctttgtgtattatcctcttcagaagtgtgtttttacactaacaaatgagtcttattttataggacacaaaatgagcaagtgagtgatcaa 12145738  T
Q  182 gataattaaggtccactaactattca 207  Q
      ||||||||  ||||||||||||||    
T  12145739 agtaattaagaaccactaactattca 12145764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 23599935 - 23599986
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 120  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  23599935 agaagatgaagaagaagatgaaagcattttgtattattctcttcataagtgt 23599986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 16311 - 16258
Alignment:
Q  69 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 122  Q
    ||||||||||||| || || |||||||||||||||||| |||||||| ||||||    
T  16311 agaagaggaagaaaaatataaaagcactttgtattattttcttcacaggtgtgt 16258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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