View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_23 (Length: 335)
Name: NF0777_low_23
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 42190664 - 42190915
Alignment:
| Q |
1 |
taactattatgagatcggtactcatgtatatttttatttatttatatggaagcacatgagacttattagttattacaaacacgtatagattgcatcggtt |
100 |
Q |
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| T |
42190664 |
taactattatgagatcggtactcatgtatatttttatttatttatatggaagcacatgagacttattagttattacaaacacgtatagattgcatcggtt |
42190763 |
T |
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| Q |
101 |
agtacagacagattaaacatgtatagaaggaatgagaccaacatcacaagccaagatagatggattaattccatgcaattttgataaggcctctcacatg |
200 |
Q |
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| T |
42190764 |
agtacag----attaaacatgtatagaaggaatgagaccaacatcacaagccaagatagatggcttaattccatgcaattttgataaggcctctcacatg |
42190859 |
T |
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| Q |
201 |
acaaaccaactctcattacagcagttatggactcctcaactttatgcatcccatct |
256 |
Q |
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| T |
42190860 |
acaaaccaactctcattacagcagttatggactcctcaactttatgcatcccatct |
42190915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 42209267 - 42209360
Alignment:
| Q |
108 |
acagattaaacatgtatagaaggaatgagaccaacatcacaagccaag-atagatggattaattccatgcaattttgataaggcctctcacatg |
200 |
Q |
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| T |
42209267 |
acagattatacaagtatagcaggcatcagaccaacatcacaagcctagtatagactgcttaattccatgcaattttgataaggcttctctcatg |
42209360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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