View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0777_low_26 (Length: 315)

Name: NF0777_low_26
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0777_low_26
NF0777_low_26
[»] chr8 (1 HSPs)
chr8 (1-225)||(1881818-1882042)
[»] chr6 (25 HSPs)
chr6 (112-225)||(12052195-12052308)
chr6 (110-225)||(20652241-20652356)
chr6 (110-222)||(20653299-20653410)
chr6 (110-225)||(20640091-20640206)
chr6 (110-225)||(20633480-20633595)
chr6 (110-214)||(12042187-12042290)
chr6 (125-222)||(12051362-12051459)
chr6 (154-225)||(12051508-12051579)
chr6 (110-225)||(12052344-12052459)
chr6 (108-218)||(20640238-20640348)
chr6 (108-218)||(20640686-20640796)
chr6 (120-215)||(20639220-20639315)
chr6 (108-218)||(20652388-20652498)
chr6 (110-218)||(20640464-20640572)
chr6 (1-111)||(4141178-4141288)
chr6 (154-201)||(12049887-12049934)
chr6 (134-225)||(20650897-20650988)
chr6 (143-225)||(20653040-20653121)
chr6 (108-208)||(12050158-12050258)
chr6 (125-208)||(20652630-20652713)
chr6 (120-182)||(12050593-12050655)
chr6 (143-225)||(12051098-12051178)
chr6 (143-208)||(12042476-12042540)
chr6 (131-215)||(12050808-12050893)
chr6 (110-203)||(12050966-12051059)
[»] scaffold0036 (1 HSPs)
scaffold0036 (108-209)||(110464-110565)
[»] chr3 (3 HSPs)
chr3 (1-111)||(41541729-41541836)
chr3 (110-218)||(9098272-9098380)
chr3 (155-218)||(9098706-9098769)
[»] chr4 (3 HSPs)
chr4 (134-225)||(12999207-12999298)
chr4 (134-225)||(12999791-12999882)
chr4 (147-222)||(12999496-12999571)
[»] scaffold0113 (1 HSPs)
scaffold0113 (134-225)||(48070-48161)
[»] chr2 (1 HSPs)
chr2 (172-223)||(24513517-24513568)
[»] chr5 (1 HSPs)
chr5 (1-111)||(3855335-3855445)
[»] scaffold0173 (1 HSPs)
scaffold0173 (143-203)||(34263-34323)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1882042 - 1881818
Alignment:
Q  1 aagaaattgaagctttagaaaatgaacccttgtgaagtggagttttttgaggttgggcaaattagtaagagagttatgaacattgtcaatagttaagacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1882042 aagaaattgaagctttagaaaatgaacccttgtgaagtggagttttttgaggttgggcaaattagtaagagagttatgaacattgtcaatagttaagacc 1881943  T
Q  101 ccattcccatttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1881942 ccattcccatttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcg 1881843  T
Q  201 agggacaaactcaaccttcatattt 225  Q
    |||||||||||||||||||||||||    
T  1881842 agggacaaactcaaccttcatattt 1881818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 12052308 - 12052195
Alignment:
Q  112 tttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaact 211  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |    
T  12052308 tttgcgagaaggatcatcccattactttcggtttaccgaatataaaaccgaagaggttcaaatattatgttactcatcataggacatcgagggacaaatt 12052209  T
Q  212 caaccttcatattt 225  Q
    ||||||||||||||    
T  12052208 caaccttcatattt 12052195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 20652241 - 20652356
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaa 209  Q
    ||||||||| |||||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20652241 tttttgcgacaaggatcatctcattactttctatttatcaaatttaaaaccaaataggttcaaatattatgttacacatcaaaggacatcgagggacaaa 20652340  T
Q  210 ctcaaccttcatattt 225  Q
     |||||||||||||||    
T  20652341 ttcaaccttcatattt 20652356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 20653299 - 20653410
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaa 209  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  20653299 tttttgcgataaggatcatcccattactttcagtttaccaaatttaaaaccaaatagg-tcaaatattatgttacgcatcaaaggacatcgagggacaaa 20653397  T
Q  210 ctcaaccttcata 222  Q
     |||| |||||||    
T  20653398 ttcaaacttcata 20653410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 20640091 - 20640206
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaa 209  Q
    ||||| ||| |||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  20640091 tttttacgacaaggatcatctcattactttctatttatcgaatttaaaaccaaataggttcaaatattatgttacacatcaaaggacatcgaaggacaaa 20640190  T
Q  210 ctcaaccttcatattt 225  Q
     |||||||||||||||    
T  20640191 ttcaaccttcatattt 20640206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 20633480 - 20633595
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaa 209  Q
    |||| |||| |||| |||||||| |||||| | |||||||||| |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  20633480 ttttcgcgacaagggtcatcccaatactttatatttaccgaatttaaaaccaaataggttcaaatatcttgttactcatcaaagaacatcgagggacaaa 20633579  T
Q  210 ctcaaccttcatattt 225  Q
     |||||||||||||||    
T  20633580 ttcaaccttcatattt 20633595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 12042290 - 12042187
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaa 209  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||    
T  12042290 tttttgcgataaggatcatcccattactttcagtttaccgaattcaaaaccaaatagg-tcaaatattatgctacgcatcaaaggacattgagggacaaa 12042192  T
Q  210 ctcaa 214  Q
     ||||    
T  12042191 ttcaa 12042187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 12051459 - 12051362
Alignment:
Q  125 tcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcata 222  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| ||| | |||||||| || ||||||||||||||||| ||| ||||||||||||    
T  12051459 tcatcccactactttctgtttaccgaatttaaaaccaaataggttaaaaaaatatgttacgcaacaaaggacatcgagggaaaaattcaaccttcata 12051362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 12051579 - 12051508
Alignment:
Q  154 taaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatattt 225  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| | |||||||||||||    
T  12051579 taaaaccaaataggttcaaatatcttgttactcatcaaagaacatcgagggacaaattgaaccttcatattt 12051508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 12052459 - 12052344
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaa 209  Q
    |||| |||| |||| ||||| || |||||| | |||||||||| |||||||||||||||||||||||  |||||| |||||| ||| ||||||||||||     
T  12052459 ttttcgcgacaagggtcatctcaatactttatatttaccgaatttaaaaccaaataggttcaaatatcttgttacgcatcaagggatatcgagggacaag 12052360  T
Q  210 ctcaaccttcatattt 225  Q
      ||||||||||||||    
T  12052359 gccaaccttcatattt 12052344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 20640238 - 20640348
Alignment:
Q  108 catttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggaca 207  Q
    |||||||||||||| | |||| ||| |||||||  ||||||||||  ||||||||||||||||| |||| || || |||||||| |||||||||||||||    
T  20640238 catttttgcgataaaggtcattccaatactttcattttaccgaatacaaaaccaaataggttcacatatcatatttctcatcaagggacatcgagggaca 20640337  T
Q  208 aactcaacctt 218  Q
    |  ||||||||    
T  20640338 agttcaacctt 20640348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 20640686 - 20640796
Alignment:
Q  108 catttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggaca 207  Q
    ||||||||||| |||| |||| ||| |||||||  |||||||||| |||||||||||||||||| |||| || || | |||||| |||||||||||||||    
T  20640686 catttttgcgacaagggtcattccaatactttcattttaccgaatataaaaccaaataggttcacatatcatatttcgcatcaagggacatcgagggaca 20640785  T
Q  208 aactcaacctt 218  Q
    |  ||||||||    
T  20640786 agttcaacctt 20640796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 20639220 - 20639315
Alignment:
Q  120 aaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaac 215  Q
    |||| ||||| ||||||||||| ||||| |||| |||||| ||||||| ||||||| |||||||  |||||||||||||| ||||||||| |||||    
T  20639220 aagggtcatctcattactttctatttactgaatttaaaacaaaatagggtcaaatactatgttaagcatcaaaggacatcaagggacaaattcaac 20639315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 20652388 - 20652498
Alignment:
Q  108 catttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggaca 207  Q
    ||||||||||| |||| |||| ||| |||||||  ||||||||||  ||||||||||||||||| |||| || || | |||||| |||||||||||||||    
T  20652388 catttttgcgacaagggtcattccaatactttcattttaccgaatacaaaaccaaataggttcacatatcatatttcgcatcaagggacatcgagggaca 20652487  T
Q  208 aactcaacctt 218  Q
    |  ||||||||    
T  20652488 agttcaacctt 20652498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 20640464 - 20640572
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaa 209  Q
    ||||||||| |||| |||| ||| |||||||  ||||||||||  ||||||||||||||||| |||| || || | |||||| ||||||||||||||||     
T  20640464 tttttgcgacaagggtcattccaatactttcattttaccgaatacaaaaccaaataggttcacatatcatatttcgcatcaagggacatcgagggacaag 20640563  T
Q  210 ctcaacctt 218  Q
     ||||||||    
T  20640564 ttcaacctt 20640572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 4141288 - 4141178
Alignment:
Q  1 aagaaattgaagctttagaaaatgaacccttgtgaagtggagttttttgaggttgggcaaattagtaagagagttatgaacattgtcaatagttaagacc 100  Q
    |||| ||| ||||||||||||||||||| |||| | ||||||||||| ||||||||||| |||||||  ||| | || ||||  ||| || ||||| |||    
T  4141288 aagatatttaagctttagaaaatgaacctttgtcatgtggagtttttcgaggttgggcagattagtataagattcataaacacagtctattgttaacacc 4141189  T
Q  101 ccattcccatt 111  Q
    |||||||||||    
T  4141188 ccattcccatt 4141178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 12049934 - 12049887
Alignment:
Q  154 taaaaccaaataggttcaaatattatgttactcatcaaaggacatcga 201  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  12049934 taaaaccaaataggttcaaatattatgttacgcatcaagggacatcga 12049887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 20650897 - 20650988
Alignment:
Q  134 tactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatattt 225  Q
    |||||||  |||||| ||| |||||||| |||||||||||||| |||||    ||||||||||||| ||||||||  |||||||||||||||    
T  20650897 tactttcattttaccaaatttaaaaccagataggttcaaatatcatgttttcaatcaaaggacatcaagggacaacttcaaccttcatattt 20650988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 20653040 - 20653121
Alignment:
Q  143 tttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatattt 225  Q
    |||||| ||| ||||||||||||||||||||||| |||||    ||||||||||||| ||||||||  |||||||||||||||    
T  20653040 tttaccaaatttaaaaccaaataggttcaaatat-atgttttcaatcaaaggacatcaagggacaagttcaaccttcatattt 20653121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 12050258 - 12050158
Alignment:
Q  108 catttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggaca 207  Q
    ||||||||| | |||| |||| ||| |||||||  |||||||||| ||||| ||||||||| ||||||| |||||   |||||||||||||| | |||||    
T  12050258 catttttgcaacaagggtcattccaatactttcattttaccgaatttaaaatcaaataggtacaaatatcatgttttgcatcaaaggacatcaaaggaca 12050159  T
Q  208 a 208  Q
    |    
T  12050158 a 12050158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 20652630 - 20652713
Alignment:
Q  125 tcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaa 208  Q
    |||| ||| |||||||  ||||||||||  |||| |||||||||||| |||||||||| | |||||| ||||||| || |||||    
T  20652630 tcattccaatactttcattttaccgaatacaaaaacaaataggttcacatattatgtttcgcatcaagggacatcaagagacaa 20652713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 12050655 - 12050593
Alignment:
Q  120 aaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgtt 182  Q
    ||||||||| ||| || |||||  ||||||||| |||||||||||| |||||||||| |||||    
T  12050655 aaggatcatgccaataatttctaattaccgaatttaaaaccaaatatgttcaaatatcatgtt 12050593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 12051178 - 12051098
Alignment:
Q  143 tttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatattt 225  Q
    |||||||||| |||||||||||||||||||||| ||||||    ||||||| ||||| ||||||||  || ||||||||||||    
T  12051178 tttaccgaatttaaaaccaaataggttcaaata-tatgttttcaatcaaagaacatcaagggacaagttc-accttcatattt 12051098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 12042540 - 12042476
Alignment:
Q  143 tttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaa 208  Q
    |||||||||| ||||||||||||||||||||||  |||||    ||||||||||||| ||||||||    
T  12042540 tttaccgaatttaaaaccaaataggttcaaata-aatgttttcaatcaaaggacatcaagggacaa 12042476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 12050893 - 12050808
Alignment:
Q  131 cattactttctgtttaccgaatgtaaaaccaaataggttcaaa-tattatgttactcatcaaaggacatcgagggacaaactcaac 215  Q
    ||||||||||| ||||| |||| |||||| ||||||  ||||| || ||| |||  ||||||| |||||||||||||||| |||||    
T  12050893 cattactttctatttactgaatttaaaacaaaatagtgtcaaaatactattttaagcatcaaatgacatcgagggacaaattcaac 12050808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 12051059 - 12050966
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagg 203  Q
    |||| |||| ||||| ||| ||| |||||||  ||||||||||  ||||||||||| ||| | |||| ||||| | |||||| |||||||||||    
T  12051059 ttttcgcgacaaggaacattccaatactttcattttaccgaatacaaaaccaaataagttgacatatcatgtttcgcatcaagggacatcgagg 12050966  T

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Target: scaffold0036 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 110565 - 110464
Alignment:
Q  108 catttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggaca 207  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  110565 catttttgtgataaggatcatcccattactttcagtttaccgaatttaaaaccaaataggttcaaatattatgttactcatcaaaggacatcaagagaca 110466  T
Q  208 aa 209  Q
    ||    
T  110465 aa 110464  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 41541836 - 41541729
Alignment:
Q  1 aagaaattgaagctttagaaaatgaacccttgtgaagtggagttttttgaggttgggcaaattagtaagagagttatgaacattgtcaatagttaagacc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||   | | |||||||||| ||    
T  41541836 aagaaattgaagctttggaaaatgaacccttgtgaagtggagttttttgaggttgggcaaattagtacgagagttgtgaa---tcttaatagttaaggcc 41541740  T
Q  101 ccattcccatt 111  Q
    |||||||||||    
T  41541739 ccattcccatt 41541729  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 9098380 - 9098272
Alignment:
Q  110 tttttgcgataaggatcatcccattactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaa 209  Q
    ||||||||| ||||  ||| |||||||||||  || |||||||  |||| |||||||||||| |||| ||||| | | |||| ||||||||||||||| |    
T  9098380 tttttgcgacaagggacattccattactttcatttaaccgaatacaaaatcaaataggttcacatatcatgtttcgcgtcaagggacatcgagggacata 9098281  T
Q  210 ctcaacctt 218  Q
     ||||||||    
T  9098280 gtcaacctt 9098272  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 9098769 - 9098706
Alignment:
Q  155 aaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaacctt 218  Q
    ||||||||| ||||||| |||| ||||| |  ||||| ||||||||||||||||| ||||||||    
T  9098769 aaaaccaaaaaggttcacatatcatgtttcgtatcaagggacatcgagggacaaattcaacctt 9098706  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 12999298 - 12999207
Alignment:
Q  134 tactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatattt 225  Q
    |||||||  ||||||||||  ||||||||||||||||| |||| ||||| | |||||| ||||||||||||||||  || ||||||||||||    
T  12999298 tactttcattttaccgaatacaaaaccaaataggttcacatatcatgtttcgcatcaagggacatcgagggacaagttctaccttcatattt 12999207  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 12999882 - 12999791
Alignment:
Q  134 tactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatattt 225  Q
    |||||||  ||||||||||  |||| |||||||||||| |||| ||||| | |||| | ||||||||||||||||  |||||||||||||||    
T  12999882 tactttcattttaccgaatacaaaatcaaataggttcagatatcatgtttcgcatctagggacatcgagggacaagttcaaccttcatattt 12999791  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 12999571 - 12999496
Alignment:
Q  147 ccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcata 222  Q
    |||||| ||||||||||||| ||||||||| ||||| | |||||| ||||||| ||||||||  | ||||||||||    
T  12999571 ccgaatttaaaaccaaatagtttcaaatatcatgtttcgcatcaagggacatcaagggacaagttgaaccttcata 12999496  T

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Target: scaffold0113 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 48161 - 48070
Alignment:
Q  134 tactttctgtttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatattt 225  Q
    |||||||  ||||||||||  ||||||||||||||||| |||| ||||| | ||| || ||||||||||||||||  |||| ||||||||||    
T  48161 tactttcattttaccgaatacaaaaccaaataggttcacatatcatgtttcgcattaagggacatcgagggacaagttcaatcttcatattt 48070  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 24513568 - 24513517
Alignment:
Q  172 aatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatat 223  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  24513568 aatattatgttacgcatcaaaggacatcgagggacgaattcaaccttcatat 24513517  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3855335 - 3855445
Alignment:
Q  1 aagaaattgaagctttagaaaatgaacccttgtgaagtggagttttttgaggttgggcaaattagtaagagagttatgaacattgtcaatagttaagacc 100  Q
    |||| ||| ||||||| ||||| ||||| |||| | |||||||||||| || |||||||||| ||||||| | |||| ||||| ||  ||  ||||||||    
T  3855335 aagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttaagtttgggcaaatgagtaagatatttatcaacatggtatatcattaagacc 3855434  T
Q  101 ccattcccatt 111  Q
    |||||||||||    
T  3855435 ccattcccatt 3855445  T

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Target: scaffold0173 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 34323 - 34263
Alignment:
Q  143 tttaccgaatgtaaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagg 203  Q
    |||||||||| | || ||||||||||||| |||| ||||| | ||||||||||||||||||    
T  34323 tttaccgaatatcaagccaaataggttcacatatcatgtttcgcatcaaaggacatcgagg 34263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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