View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0777_low_27 (Length: 310)
Name: NF0777_low_27
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 300
Target Start/End: Complemental strand, 51342145 - 51341875
Alignment:
| Q |
30 |
attctatcaattggagttggagtgagtttttgtgcatcatcagtacttttattcacctcagttattctcccttcaacttggaggttaacaggaggttatg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51342145 |
attctatcaattggagttggagtgagtttttgtgcatcatcggtacttttattcacctcagttattctcccttcaacttggaggttaacaggaggttatg |
51342046 |
T |
|
| Q |
130 |
tgtattcgaggataacaaggatgacaataggatacttgttcctttatgcctctgctttggtcatgggtctgttttctactatgtctggtgttgttttggt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51342045 |
tgtattcgaggataacaaggatgacaataggatacttgttcctttatgcctctgctttggtcatgggtttgttttctactatgtctggtgttgttttggt |
51341946 |
T |
|
| Q |
230 |
ctatgatttcctccctggttgggtcttttattccatttttccactttgtgttatgccagctttcgcctttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51341945 |
ctatgatttcctccctggttgggtcttttattccatttttccactttgtgttatgccagccttcgcctttg |
51341875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6718 times since January 2019
Visitors: 5770