View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_31 (Length: 288)
Name: NF0777_low_31
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 39033997 - 39034148
Alignment:
| Q |
71 |
agaattgaatttcaaaattcaacaaaaatgaagaaaggaatactaacacagcacgttcttgatgcttattagctttccaataagcataagccatggtgaa |
170 |
Q |
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| T |
39033997 |
agaattgaatttcaaaattcaacaaaaatgaagaaaggaatactaacacagcacgttcttgatgcttattagctttccaataagcataagccatggtgaa |
39034096 |
T |
|
| Q |
171 |
ttgatagagatcattgagaagaggagtgaccataggattcgttggtccatga |
222 |
Q |
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| T |
39034097 |
ttgatagagatcattgagaagaggagtgaccataggattcgtaggtccatga |
39034148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 6182801 - 6182698
Alignment:
| Q |
116 |
acacagcacgttcttgatgcttattagctttccaataagcataagccatggtgaattgatagagatcattgagaagaggagtgaccataggattcgttgg |
215 |
Q |
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||||||||||||||||||| || || |||||||| || ||||||||||| |||||||||||| |||| |||| | ||| |||||||| ||||| || || |
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| T |
6182801 |
acacagcacgttcttgatgtttgttggctttccagtatgcataagccattgtgaattgatagtgatctgtgagtaaaggtgtgaccattggatttgtggg |
6182702 |
T |
|
| Q |
216 |
tcca |
219 |
Q |
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|||| |
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| T |
6182701 |
tcca |
6182698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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