View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0777_low_33 (Length: 281)

Name: NF0777_low_33
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0777_low_33
NF0777_low_33
[»] chr3 (27 HSPs)
chr3 (40-229)||(18165773-18165962)
chr3 (40-217)||(19464970-19465147)
chr3 (35-234)||(19437570-19437769)
chr3 (35-234)||(18147442-18147641)
chr3 (35-229)||(19414796-19414990)
chr3 (103-234)||(17942634-17942765)
chr3 (35-234)||(19376234-19376433)
chr3 (40-227)||(25463667-25463854)
chr3 (35-234)||(19334621-19334820)
chr3 (35-229)||(18873072-18873266)
chr3 (36-208)||(18109052-18109224)
chr3 (39-234)||(18103962-18104157)
chr3 (36-208)||(17950445-17950617)
chr3 (35-229)||(19393761-19393955)
chr3 (103-234)||(19381573-19381704)
chr3 (110-208)||(19400413-19400511)
chr3 (110-227)||(14895586-14895703)
chr3 (108-229)||(16677895-16678016)
chr3 (104-234)||(19352073-19352203)
chr3 (104-229)||(19354396-19354521)
chr3 (138-226)||(19439359-19439447)
chr3 (104-234)||(18016703-18016833)
chr3 (36-229)||(17726731-17726924)
chr3 (103-208)||(18116645-18116750)
chr3 (36-229)||(19027960-19028153)
chr3 (45-205)||(19425309-19425469)
chr3 (103-208)||(19461867-19461974)
[»] chr4 (2 HSPs)
chr4 (35-234)||(15536145-15536344)
chr4 (35-229)||(2709782-2709976)
[»] scaffold0274 (2 HSPs)
scaffold0274 (103-234)||(21304-21434)
scaffold0274 (40-234)||(2762-2956)
[»] scaffold0648 (1 HSPs)
scaffold0648 (40-234)||(3293-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (40-234)||(6020-6214)
[»] chr8 (1 HSPs)
chr8 (42-196)||(8460164-8460318)
[»] chr6 (1 HSPs)
chr6 (76-234)||(13666139-13666297)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 18165773 - 18165962
Alignment:
Q  40 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 139  Q
    ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18165773 tgtggagtaataggctatttggtgaagtttcattgcacttctccgatttgaaccaattggaaatcatgaacttgggagaaaatgaattttctggaaccat 18165872  T
Q  140 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctc 229  Q
    ||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||| | |||||||||||    
T  18165873 accaattttgatttcacaaaagttagaagtggtcatattgagagctaaccaatttgaagggactattccaccacaaatattcaatctctc 18165962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 19464970 - 19465147
Alignment:
Q  40 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 139  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  || |||||||||||| |||||||||||||||||||||||    
T  19464970 tgtggagtaataggctatctggtgaagtttcgttgcacttctctaatttgaaccaattggaaaacatgaacttgggcgaaaatgaattttctggaaccat 19465069  T
Q  140 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaact 217  Q
    ||| ||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||    
T  19465070 acctatcttgatttcacaagacttagaagtggtcatattgagagctaaccaatttgaagggactattccaccacaact 19465147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 19437570 - 19437769
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    ||||||||||||||||||| | ||||| ||| || ||||| ||||||||||   ||| ||||||  || ||||||||| |||||||||||||||||||||    
T  19437570 gaacctgtggagtaataggttgtcaggggaacttccattgtacttctctaaccggaaacaattggaaaccatgaacttaggagaaaatgaattttctgga 19437669  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||| ||||    
T  19437670 accataccaatcatgatgtcacaaaacttaaaagtggtcatattgagagctaataaatttgaagggactattccgcaacaactattcaatctctcttatt 19437769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 18147442 - 18147641
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    ||||||||||||||||||| | || || ||| || ||||| |||||||| | | ||| ||||||  |||||||||||| |||||||||||||||||||||    
T  18147442 gaacctgtggagtaataggttgtctggggaacttccattgtacttctcttactggaaacaattggaaatcatgaacttaggagaaaatgaattttctgga 18147541  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||| ||||||||||| |||||||| ||||| ||||| ||||    
T  18147542 accataccaatcatgatgtcacaaaacttactagtggtcatattgagagctaataaatttgaagggactattccacaacaactattcaacctctcttatt 18147641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 19414796 - 19414990
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||| ||||  || ||| ||||| ||| ||||||| ||||||||||||||||||| ||||    
T  19414796 gaacctgtggagtaataggctatctggtgaagttcctttgtactgctctggttggaagcaattaagagtcatgaatttgggagaaaatgaattttatgga 19414895  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctc 229  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||| | ||| || || ||||||||    
T  19414896 accataccaatcatgatgtcacagaacttagaagtggtcatattgagagataaccgatttgaagggactattccaccacagctatttaatctctc 19414990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 17942634 - 17942765
Alignment:
Q  103 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggac 202  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||   | |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17942634 tcatgaatttgggagaaaatgagttttttggaaccataccaatcagcttatcacaaaacttacaagtggtcatattgagagctaaccaatttgaagggac 17942733  T
Q  203 tattccgcaacaactgttcaatctctcctatt 234  Q
    ||||||||||||||| ||||||||||||||||    
T  17942734 tattccgcaacaactattcaatctctcctatt 17942765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 19376234 - 19376433
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    |||||| ||||||||||||||||| |||||||||  |   ||| |||||  ||  || ||||||  | || |||| ||||||||||||||||||||||||    
T  19376234 gaacctatggagtaataggctatctggtgaagttctagctcacctctctgcttcaaatcaattgcaattcttgaatttgggagaaaatgaattttctgga 19376333  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    ||||||||||||| |||||||||||||||| |  |||||||||||||||||||  ||||||| ||||||||||| |||||||| ||||||||||| ||||    
T  19376334 accataccaatcaagatgtcacaaaacttatatttggtcatattgagagctaataaatttgaagggactattccacaacaactattcaatctctcttatt 19376433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 25463667 - 25463854
Alignment:
Q  40 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 139  Q
    |||||| |||||||||||| |||||||||  | | ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||||||||||    
T  25463667 tgtggaataataggctatctggtgaagttctagtacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctggaaccat 25463766  T
Q  140 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctc 227  Q
    |||||| |  ||| ||| | ||||||||||||||||||||||||| ||||||||||| |||| |||||| | |||||| |||||||||    
T  25463767 accaatgaacatgccactatacttagaagtggtcatattgagagcaaaccaatttgaagggaatattccaccacaactattcaatctc 25463854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 19334621 - 19334820
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    |||||| |||||||||||||| || |||||||||  |  |||  ||||| ||| ||| ||||||||| |||| || ||||||||||||||||||||||||    
T  19334621 gaacctatggagtaataggctgtctggtgaagttcaagagcatctctctgattggaaacaattgagagtcataaatttgggagaaaatgaattttctgga 19334720  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    | ||||||||    |||||||||||||||| || || ||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||| ||||    
T  19334721 agcataccaacagggatgtcacaaaacttacaactgatcatattgagagccaatcaatttgaagggactattccacaacaactattcaatctctcttatt 19334820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 18873266 - 18873072
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    |||||||||||||||||||||||| |||||||||  |   ||| ||||| | | ||| || |||   ||| |||| ||||||||||||||||||||||||    
T  18873266 gaacctgtggagtaataggctatctggtgaagttcaagatcacctctctgaatggaaacagttgcagatcttgaatttgggagaaaatgaattttctgga 18873167  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctc 229  Q
    | ||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |||| | | |||||| || ||||||||    
T  18873166 aacataccattcatgatgtcacaaaacctagaagtagtcatattgagagctaaccaatttgaagggaatatttcaccacaactatttaatctctc 18873072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 18109052 - 18109224
Alignment:
Q  36 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 135  Q
    ||||| ||||||||||||||||| |||||||||  |   ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||| ||    
T  18109052 aacctttggagtaataggctatctggtgaagttctaggacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctgcaa 18109151  T
Q  136 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattcc 208  Q
    | ||||||||||   | |||||||| |||||||| |||||||||||||||||||||||||| || ||||||||    
T  18109152 caataccaatcaatttatcacaaaaattagaagttgtcatattgagagctaaccaatttgaaggaactattcc 18109224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 234
Target Start/End: Original strand, 18103962 - 18104157
Alignment:
Q  39 ctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaacca 138  Q
    ||||||||||||||| | || ||  || || ||||| |||||||||| ||||| ||||||   | ||||||| | ||||||||||||||||||||||| |    
T  18103962 ctgtggagtaataggttgtcggggaaacttccattgtacttctctaacttgaaacaattgcagaccatgaacgtaggagaaaatgaattttctggaacta 18104061  T
Q  139 taccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    ||||| |    ||||||||||||||||||||| ||||||||||||| || |||||||| ||||| |||| ||||||||| ||||||||||| ||||    
T  18104062 taccagtaggtatgtcacaaaacttagaagtgatcatattgagagccaatcaatttgaagggacaattctgcaacaactattcaatctctcttatt 18104157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 17950445 - 17950617
Alignment:
Q  36 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 135  Q
    ||||| ||||||||||||||||| |||||||||  |   ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||| ||    
T  17950445 aacctttggagtaataggctatctggtgaagttctaggacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctgcaa 17950544  T
Q  136 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattcc 208  Q
    | ||||||||||   | |||||||| |||||||| ||||||||||||||||||||||| || || ||||||||    
T  17950545 caataccaatcaatttatcacaaaaattagaagttgtcatattgagagctaaccaattagaaggaactattcc 17950617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 19393761 - 19393955
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    |||||| |||||||||| ||| || ||||||||| ||||  || ||||| ||| ||  ||||||   |||||||| |||||| |||||||||||||||||    
T  19393761 gaacctatggagtaataagctgtctggtgaagttccattaaacctctctgattggagacaattgcagatcatgaatttgggaaaaaatgaattttctgga 19393860  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctc 229  Q
    | ||||||| |   |||| |||||||||||| |||||||||||||||||| || |||||||| || |||||||| |||||||| |||||| ||||    
T  19393861 aacataccagttgggatgccacaaaacttagtagtggtcatattgagagccaatcaatttgaaggtactattccacaacaactattcaatatctc 19393955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 19381573 - 19381704
Alignment:
Q  103 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggac 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |   | ||| ||||||||||| | |||||||||||||||||||||||||| ||||     
T  19381573 tcatgaatttgggagaaaatgaattttctggaaccataccaatgaacttatcagaaaacttagaaattgtcatattgagagctaaccaatttgaagggaa 19381672  T
Q  203 tattccgcaacaactgttcaatctctcctatt 234  Q
    |||||| | |||| | ||||||||||| ||||    
T  19381673 tattccaccacaattattcaatctctcttatt 19381704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 19400413 - 19400511
Alignment:
Q  110 cttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattcc 208  Q
    ||||||||||||||||||||| ||||||||||||||||   | ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  19400413 cttgggagaaaatgaattttcgggaaccataccaatcaacttttcacaaaacttagaagttgtcatactgagagctaaccaatttgaagggactattcc 19400511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 14895703 - 14895586
Alignment:
Q  110 cttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccg 209  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||| ||||||     
T  14895703 cttgggagaaaatgaattttatggaactataccaaccatgatgtcacaatacttacaagtggttatattgagatctaaccaatttgaagggaatattcca 14895604  T
Q  210 caacaactgttcaatctc 227  Q
    | |||| | |||||||||    
T  14895603 ccacaattattcaatctc 14895586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 16677895 - 16678016
Alignment:
Q  108 aacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattc 207  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||| ||||| || | |||||    
T  16677895 aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaaggaagtattc 16677994  T
Q  208 cgcaacaactgttcaatctctc 229  Q
    | | |||  | |||||||||||    
T  16677995 cactacagttattcaatctctc 16678016  T

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Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 19352073 - 19352203
Alignment:
Q  104 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggact 203  Q
    |||||||||||||||||||||||||||||||| ||||||  |   ||||||||||||||||| |||||||||||| ||||| ||  ||||||| |||| |    
T  19352073 catgaacttgggagaaaatgaattttctggaaacataccggtagggatgtcacaaaacttagtagtggtcatatttagagccaataaatttgaagggatt 19352172  T
Q  204 attccgcaacaactgttcaatctctcctatt 234  Q
    ||||| |||||| | ||||||||||| ||||    
T  19352173 attccacaacaattattcaatctctcttatt 19352203  T

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Target: chr3; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 19354396 - 19354521
Alignment:
Q  104 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggact 203  Q
    ||||||||||||||  || |||||||||||||||||||||||||  |||||||||  ||||  |||||||||||||||||| ||||||||||| |||| |    
T  19354396 catgaacttgggagctaacgaattttctggaaccataccaatcaaaatgtcacaatccttaacagtggtcatattgagagccaaccaatttgaagggaat 19354495  T
Q  204 attccgcaacaactgttcaatctctc 229  Q
    || || |||||||| || ||||||||    
T  19354496 atcccacaacaactatttaatctctc 19354521  T

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Target: chr3; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 19439359 - 19439447
Alignment:
Q  138 ataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatct 226  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| || |||||||| |||||||| ||||||||    
T  19439359 ataccaatcatgatgtcacaaaacttaggagtggtaatattgagagataaccaatttgaaggaactattccacaacaactattcaatct 19439447  T

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Target: chr3; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 18016703 - 18016833
Alignment:
Q  104 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggact 203  Q
    ||||||||||||| |||||||||||||||||| ||||||| |   ||||||||||||||||  |||||||||||||||||| ||  ||||||| |||| |    
T  18016703 catgaacttgggaaaaaatgaattttctggaaacataccagtagggatgtcacaaaacttaagagtggtcatattgagagccaataaatttgaagggatt 18016802  T
Q  204 attccgcaacaactgttcaatctctcctatt 234  Q
    ||||| | |||| | ||||||||||| ||||    
T  18016803 attccacgacaattattcaatctctcttatt 18016833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 17726924 - 17726731
Alignment:
Q  36 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 135  Q
    ||||| |||||||||||||| || |||||||||  |   ||| ||||| ||||||| ||||||  |  ||| |  |||||||||||||||||||||||||    
T  17726924 aacctatggagtaataggctgtctggtgaagttctaggacacctctctgatttgaaacaattgcaacacattattttgggagaaaatgaattttctggaa 17726825  T
Q  136 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctc 229  Q
     ||||||| |   |||||||||| |||||||| ||||||||||| ||| ||| || ||||| ||| |||||||   |||||| |||||||||||    
T  17726824 acataccagtagagatgtcacaacacttagaaatggtcatattgggaggtaatcattttgaagggcctattcctgcacaactattcaatctctc 17726731  T

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Target: chr3; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 18116645 - 18116750
Alignment:
Q  103 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggac 202  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  ||||| | |||||||| |||||| |||||| |||||||||||| ||||     
T  18116645 tcatgaacttgggagaaaatgaattttctggaaccataccattgaacataccacaatatttagaagtagtcatactgagaggtaaccaatttgaagggag 18116744  T
Q  203 tattcc 208  Q
    ||||||    
T  18116745 tattcc 18116750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 19028153 - 19027960
Alignment:
Q  36 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 135  Q
    ||||| |||||||||||||| || |||||||||  |   ||| ||||| ||||||| ||||||  |  ||| |  |||||||||||||||||||||||||    
T  19028153 aacctatggagtaataggctgtctggtgaagttctaggacacctctctgatttgaaacaattgcaacacattattttgggagaaaatgaattttctggaa 19028054  T
Q  136 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctc 229  Q
     ||||||| |   |||||||||| |||||||| ||||||||||| ||| ||| || ||||| ||| |||||||   |||||| |||||||||||    
T  19028053 acataccagtagagatgtcacaacacttagaaatggtcatattgggaggtaatcattttgaagggcctattcctgcacaactattcaatctctc 19027960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 19425309 - 19425469
Alignment:
Q  45 agtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccataccaa 144  Q
    ||||||| ||||||  ||||||||  |  |||| ||||| ||| ||| ||||||   |||||||  |||||||||||| ||||||| |||| ||||||||    
T  19425309 agtaataagctatcctgtgaagttatacagcacctctctgattggaaacaattgcagatcatgattttgggagaaaataaattttcaggaatcataccaa 19425408  T
Q  145 tcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactat 205  Q
    | |   | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  19425409 tgaacttatcacaaaaattagaagtcgtcatattgagagctaaccaatttgaagggactat 19425469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 19461867 - 19461974
Alignment:
Q  103 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatat--tgagagctaaccaatttgagggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  ||||| | ||||||||  ||||||  |||||| |||||||||||| |||    
T  19461867 tcatgaacttgggagaaaatgaattttctggaaccataccattgaacataccacaatatttagaagtattcatatactgagaggtaaccaatttgaaggg 19461966  T
Q  201 actattcc 208  Q
    | ||||||    
T  19461967 agtattcc 19461974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 15536145 - 15536344
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    ||||||||||| ||||||  | || ||||||||| || ||||| |||||  || ||| ||||||  || |||||||||||||||||||||||||||||||    
T  15536145 gaacctgtggaataatagtttgtctggtgaagttccaatgcacctctctgcttcgaaacaattgcaaaccatgaacttgggagaaaatgaattttctgga 15536244  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| | ||  ||||||| |||| |||||||| |||| | ||||||||||| ||||    
T  15536245 accataccaatcatgatgtcacaaaacttagtagtggtcatattgagaaccaataaatttgaagggattattccgccacaattattcaatctctcttatt 15536344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 2709976 - 2709782
Alignment:
Q  35 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 134  Q
    |||| ||||||||||||  ||||| ||||||||| || ||||| ||||||||| | |   ||||  |  ||||||| | |||||||||||||||||||||    
T  2709976 gaacttgtggagtaataaactatctggtgaagttccaatgcacctctctaattggtatggattgcaagccatgaacctaggagaaaatgaattttctgga 2709877  T
Q  135 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctc 229  Q
    || |||||||||| |||||| ||| | ||  ||||  ||||||||||||||||||||||| | |||||||||||   |||| | |||||||||||    
T  2709876 actataccaatcaagatgtcgcaagatttgaaagttctcatattgagagctaaccaatttaaagggactattccaacacaattattcaatctctc 2709782  T

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Target: scaffold0274 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 21304 - 21434
Alignment:
Q  103 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggac 202  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||  ||| ||||| | ||||||||||||||||| |||||||||||||| ||  ||||    
T  21304 tcatgaatttgggagaaaatgagttttctggaaccataccaatcaacatgccacaatatttagaagtggtcatattaagagctaaccaattcga-aggac 21402  T
Q  203 tattccgcaacaactgttcaatctctcctatt 234  Q
    |||||| | |||| | ||||||||||| ||||    
T  21403 tattccaccacaattattcaatctctcttatt 21434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 2956 - 2762
Alignment:
Q  40 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 139  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  2956 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 2857  T
Q  140 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| || |||||||||||   |||| | ||||||||||| ||||    
T  2856 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattccatcacaattattcaatctctcttatt 2762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 3487 - 3293
Alignment:
Q  40 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 139  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  3487 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 3388  T
Q  140 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| || |||||||||||   |||| | ||||||||||| ||||    
T  3387 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattccatcacaattattcaatctctcttatt 3293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 6020 - 6214
Alignment:
Q  40 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 139  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  6020 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 6119  T
Q  140 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| || |||||||||||   |||| | ||||||||||| ||||    
T  6120 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattccatcacaattattcaatctctcttatt 6214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 8460164 - 8460318
Alignment:
Q  42 tggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccatac 141  Q
    ||||||||||||||||| || |||||| |  || || ||| | ||||||| ||||||  ||| || ||||||||||||||| |||||||||||||||| |    
T  8460164 tggagtaataggctatctggcgaagttccggtggacctctttgatttgaaacaattggaaatgattaacttgggagaaaatcaattttctggaaccattc 8460263  T
Q  142 caatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttga 196  Q
    |||| |  |||||||   | ||||||||||||||||||||||| |||||||||||    
T  8460264 caatgaacatgtcacggtatttagaagtggtcatattgagagccaaccaatttga 8460318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 234
Target Start/End: Complemental strand, 13666297 - 13666139
Alignment:
Q  76 acttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcat 175  Q
    |||||||||| ||||| || |||  || ||||||||| |||||||||||||||  |||||||||| ||||| |||| |||| ||||||  ||||||||||    
T  13666297 acttctctaacttgaaacagttgcaaaccatgaacttaggagaaaatgaatttaatggaaccataacaatcttgatttcaccaaactttcaagtggtcat 13666198  T
Q  176 attgagagctaaccaatttgaggggactattccgcaacaactgttcaatctctcctatt 234  Q
    ||||||||  ||  ||||||| || | |||||| | |||||| || |||||||| ||||    
T  13666197 attgagagaaaataaatttgaaggcagtattcccccacaactatttaatctctcttatt 13666139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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