View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_4 (Length: 520)
Name: NF0777_low_4
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 114 - 520
Target Start/End: Original strand, 47579628 - 47580032
Alignment:
| Q |
114 |
caattatgtcagctgttcaagctagcagatacagttcatatacagatccttatgaggttcatgtgtacnnnnnnnnnncatgctccatttttgttgttgg |
213 |
Q |
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| T |
47579628 |
caattatgtcagctgttcaagctagcagatacagttcatatacagatccttatgaggttcatgtgtactttttttt--catgctccatttttgttgttgg |
47579725 |
T |
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| Q |
214 |
tgttgctaatgttcatttccatgtttattttattgctgatttggttcatatgggtgatattatcagagattcactcagacaattaggggaatacaaggtg |
313 |
Q |
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| T |
47579726 |
tgttactaatgttcatttccatgtttattttattgctgatttggttcatatgggtgatattatcagagattcactcagacaattaggggaatacaaggtg |
47579825 |
T |
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| Q |
314 |
ccttgattataagtgcatgtttccaaatggttatgggattcttgggattatggagaaatgctgtcaggttccttagcccactttgtgttgtcccttatgt |
413 |
Q |
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| T |
47579826 |
ccttgattataagtgcatgtttccaaatggttatgggattcttgggattatggagaaatgctgtcaggttccttagcccactttgtgttgtcccttatgt |
47579925 |
T |
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| Q |
414 |
aacattcactggacttggtctctatcatcttggttttcctatggtataaattcctacttatgcaacttttcattcaaagggcttaaactcttgtatccat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47579926 |
aacattcactggacttggtctctatcatcttggttttcctatggtataaattcctacttatgcaacttttcattcaaagggcttgcactcttgtatccat |
47580025 |
T |
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| Q |
514 |
gttaaat |
520 |
Q |
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| T |
47580026 |
gttaaat |
47580032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 8683682 - 8683762
Alignment:
| Q |
378 |
caggttccttagcccactttgtgttgtcccttatgtaacattcactggacttggtctctatcatcttggttttcctatggt |
458 |
Q |
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| T |
8683682 |
caggttccttagtccactttctgtagttccatatgtaacattcgctggacttggtctctatcaacttggttttccaatggt |
8683762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 8683528 - 8683604
Alignment:
| Q |
307 |
caaggtgccttgattataagtgcatgtttccaaatggttatgggattcttgggattatggagaaatgctgtcaggtt |
383 |
Q |
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| T |
8683528 |
caaggtgctttgatcataagttcaagtttccaaatggctattggattttttggtttttggagaaatgctgtcaggtt |
8683604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 8683338 - 8683382
Alignment:
| Q |
127 |
tgttcaagctagcagatacagttcatatacagatccttatgaggt |
171 |
Q |
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| T |
8683338 |
tgttcaggctagcagatataatgcatatacagatccttatgaggt |
8683382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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