View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_43 (Length: 229)
Name: NF0777_low_43
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_43 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 44154592 - 44154792
Alignment:
| Q |
29 |
agtaatactttcataatcaaagccataatctgctgatttgggtccctccgccagtttatcagagctcatgaaatcgtcttttcccttcttcgactttgga |
128 |
Q |
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| T |
44154592 |
agtaatactttcataatcaaagccataatctgatgatttgggtccctccgccagtttatcagagctcatgaaatcgtcttttctcttcttcgactttgga |
44154691 |
T |
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| Q |
129 |
aattcctcagattcttcttctgcatcaataatcattaatcagccaaaggaattttaaacacgcacaaattgaactactcgtcatgatagaaagaacatta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44154692 |
aattcctcagattcttcttctgcatcaataatcattaatcagccaaaggaattttaaacacgcacaaattgaactaatcgtcatgatagaaagaacatta |
44154791 |
T |
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| Q |
229 |
t |
229 |
Q |
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| T |
44154792 |
t |
44154792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 40899309 - 40899477
Alignment:
| Q |
29 |
agtaatactttcataatcaaagccataatctgctgatttgggtccctccgccagtttatcagagctcatgaaatcgtcttttcccttcttcgactttgga |
128 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| | |
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| T |
40899309 |
agtaatactttcataatcaaagccataatctgcttttttcggttcctccgccagtttatcagagctcatgacatcgcattttctctttttcgactttgaa |
40899408 |
T |
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| Q |
129 |
aattcctcagattcttcttctgcatcaataatcattaatcagccaaaggaattttaaacacgcacaaatt |
198 |
Q |
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| || |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
40899409 |
attttctcagattcttcatctgcatcaataatcattaatcag-ataaggaattataaacacgcacaaatt |
40899477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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