View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_5 (Length: 518)
Name: NF0777_low_5
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 114 - 518
Target Start/End: Original strand, 47579628 - 47580032
Alignment:
| Q |
114 |
caattatgtcagctgttcaagctagcagatacagttcatatacagatccttatgaggttcatgtgtacnnnnnnnncatgctccatttttgttgttggtg |
213 |
Q |
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| T |
47579628 |
caattatgtcagctgttcaagctagcagatacagttcatatacagatccttatgaggttcatgtgtacttttttttcatgctccatttttgttgttggtg |
47579727 |
T |
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| Q |
214 |
ttgctaatgttcatttccatgtttattttattgctgatttggttcatatgggtgatattatcagagattcactcagacaattaggggaatacaaggtgcc |
313 |
Q |
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| T |
47579728 |
ttactaatgttcatttccatgtttattttattgctgatttggttcatatgggtgatattatcagagattcactcagacaattaggggaatacaaggtgcc |
47579827 |
T |
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| Q |
314 |
ttgattataagtgcatgtttccaaatggttatgggattcttgggattatggagaaatgctgtcaggttccttagcccactttgtgttgtcccttatgtaa |
413 |
Q |
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| T |
47579828 |
ttgattataagtgcatgtttccaaatggttatgggattcttgggattatggagaaatgctgtcaggttccttagcccactttgtgttgtcccttatgtaa |
47579927 |
T |
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| Q |
414 |
cattcactggacttggtctctatcatcttggttttcctatggtataaattcctacttatgcaacttttcattcaaagggcttaaactcttgtatccatgt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47579928 |
cattcactggacttggtctctatcatcttggttttcctatggtataaattcctacttatgcaacttttcattcaaagggcttgcactcttgtatccatgt |
47580027 |
T |
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| Q |
514 |
taaat |
518 |
Q |
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| T |
47580028 |
taaat |
47580032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 8683682 - 8683762
Alignment:
| Q |
376 |
caggttccttagcccactttgtgttgtcccttatgtaacattcactggacttggtctctatcatcttggttttcctatggt |
456 |
Q |
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| T |
8683682 |
caggttccttagtccactttctgtagttccatatgtaacattcgctggacttggtctctatcaacttggttttccaatggt |
8683762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 8683528 - 8683604
Alignment:
| Q |
305 |
caaggtgccttgattataagtgcatgtttccaaatggttatgggattcttgggattatggagaaatgctgtcaggtt |
381 |
Q |
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| T |
8683528 |
caaggtgctttgatcataagttcaagtttccaaatggctattggattttttggtttttggagaaatgctgtcaggtt |
8683604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 8683338 - 8683382
Alignment:
| Q |
127 |
tgttcaagctagcagatacagttcatatacagatccttatgaggt |
171 |
Q |
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| T |
8683338 |
tgttcaggctagcagatataatgcatatacagatccttatgaggt |
8683382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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