View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_6 (Length: 490)
Name: NF0777_low_6
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 6129665 - 6130029
Alignment:
| Q |
17 |
cccatgataaagttattttgaattttgcaaaattagatttcaatatgatgcagaagatgtaccaaaaagaactcgggggtatcaccaagtaagtatcaca |
116 |
Q |
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| T |
6129665 |
cccatgataaagttattttgaattttgcaaaattagatttcaatatgatgcagaagatgtaccaaaaagaactcgggggtatcaccaagtaagtatcaca |
6129764 |
T |
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| Q |
117 |
aagactcaagaatattctccatatgtaaataatttcatatttagtaaatttcatatttgattaaagctctgtttggttctccgtcagaaggtaaagtatc |
216 |
Q |
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| T |
6129765 |
aagactcaagaatattctccatatgtaaataatttcatatttagtaaatttcatatttgattaaagctctgtttggttctccgtcagaaggtaaagtatc |
6129864 |
T |
|
| Q |
217 |
gcgccccaatacaatttttactgtgattttctaaaattggatttcctagcttttgttctagcgcatggatgcgttaactcaagagtcacaccaaacacat |
316 |
Q |
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| T |
6129865 |
gcgtcccaatacaatttttaccgtgattttttaaaactggatttcctagcttttgttctagcgcatggatgcgttaactcaagagtcacaccaaacacat |
6129964 |
T |
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| Q |
317 |
actaaattacgttttgagtctttgcaaatctaccgcttttagtgccacataaataattttgtttt |
381 |
Q |
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| T |
6129965 |
actaaattacgttttgagtctttgcaaatctaccgcttttagtcccacataaataattttgtttt |
6130029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 6130021 - 6130086
Alignment:
| Q |
425 |
ttttcttttgatccctgcacaatcttttcatattaaaatttgtcacagcagtcttcgttttagtct |
490 |
Q |
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| T |
6130021 |
ttttgttttgatccctgcacaatcttttcatattaaaatttgtcacagcagtcttcgttttagtct |
6130086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 34475087 - 34475015
Alignment:
| Q |
40 |
tttgcaaaattagatttcaatatgatgcagaagatgtaccaaaaagaactcgggggtatcaccaagtaagtat |
112 |
Q |
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|||||||||||||||||||||||| ||||||| ||| | ||||||||||| | |||||||||||||||||| |
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| T |
34475087 |
tttgcaaaattagatttcaatatgctgcagaaaatgcatcaaaaagaacttgccagtatcaccaagtaagtat |
34475015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 34487023 - 34486944
Alignment:
| Q |
40 |
tttgcaaaattagatttcaatatgatgcagaagatgtaccaaaaagaactcgggggtatcacc-aagtaagtatcacaaa |
118 |
Q |
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| T |
34487023 |
tttgcaaaattagatttcaacatgttgcagaaaatgcataaaaaagaactcggcagtatcaccaaagtaagtatcacaaa |
34486944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 34461323 - 34461238
Alignment:
| Q |
24 |
taaagttattttgaattttgcaaaattagatttcaatatgatgcagaagatgtaccaaaaagaactcgggggtatcaccaagtaag |
109 |
Q |
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||||||| |||| || |||||||||||||||| ||| ||| | || || ||| | ||||||||| |||| ||||||||||||||| |
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| T |
34461323 |
taaagttcttttaaactttgcaaaattagattacaacatgctacaaaaaatgcatcaaaaagaaatcggcagtatcaccaagtaag |
34461238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 34450558 - 34450478
Alignment:
| Q |
40 |
tttgcaaaattagatttcaatatgatgcagaagatgtaccaaaaagaactcgggggtatcaccaagtaagtatcacaaaga |
120 |
Q |
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| T |
34450558 |
tttgccaaattagatttcaacacggtgcagaaaatgcatcaaaatgaaatcggcagcatcaccaagtaagtatcaaaaaga |
34450478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 1594690 - 1594618
Alignment:
| Q |
40 |
tttgcaaaattagatttcaatatgatgcagaagatgtaccaaaaagaactcgggggtatcaccaagtaagtat |
112 |
Q |
| |
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|||||||||||||||||||| ||| | ||||| ||| | ||||||||||| | ||||||||||||||||| |
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| T |
1594690 |
tttgcaaaattagatttcaacatgctacagaaaatgcatcaaaaagaacttgccaatatcaccaagtaagtat |
1594618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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