View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0777_low_8 (Length: 478)
Name: NF0777_low_8
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0777_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 40 - 465
Target Start/End: Complemental strand, 41598045 - 41597620
Alignment:
| Q |
40 |
catataagataccaaaatcaataatgtgaagggtttctgccttttcagctgttttcaatatcattttatttgcaaagaaatgcgcaaattttttgaaagg |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41598045 |
catataagataccaaaatcaataatgtgaagggtttctgccttttcagctgttttcaatatcattttatttgcaaagaaatgcgcaaattttttgaaagg |
41597946 |
T |
|
| Q |
140 |
gcaagcagagataaaaacttggtaagctttcaagaaatcagcagcactaaacatcttttggctcatatataatatttgtgtaccggtaccagcaccaacc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41597945 |
gcaagcagagataaaaacttggtaagctttcaagaaatcagcagcactaaacatcttttggctcatatataatatttgtgtaccggtaccagcaccaacc |
41597846 |
T |
|
| Q |
240 |
atgcgcgcttcaatcgcattcgcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattag |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41597845 |
atgcgcgcttcaatcgcattcgcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattag |
41597746 |
T |
|
| Q |
340 |
cagtcctattgtcattagcagatacagcttgtgcactcagaaccaaaagggtcctcaaatccacagcatccctcttcctcccttgtttcttcgaacgcac |
439 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41597745 |
cagtcctattgtcattagcagatacagcttgtgcacacagaaccaaaagggtcctcaaatccacagcatccctcttcctcccttgtttcttcgaacgcat |
41597646 |
T |
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| Q |
440 |
cttccctccatcaagttcaccaacct |
465 |
Q |
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| T |
41597645 |
cttccctccatcaagttcaccaacct |
41597620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 332 - 465
Target Start/End: Complemental strand, 39576225 - 39576092
Alignment:
| Q |
332 |
ttcattagcagtcctattgtcattagcagatacagcttgtgcactcagaaccaaaagggtcctcaaatccacagcatccctcttcctcccttgtttcttc |
431 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39576225 |
ttcattagcaatcctattgtcattagcagacacagcttgtgcacacataaccaaaagggtcctcaaatccacaacatccctcttcctcccttgtttcttc |
39576126 |
T |
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| Q |
432 |
gaacgcaccttccctccatcaagttcaccaacct |
465 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
39576125 |
gaacgcgccttccctccatcaagttcaccaacct |
39576092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 23912136 - 23912235
Alignment:
| Q |
40 |
catataagataccaaaatcaataatgtgaagggtttctgccttttcagctgttttcaatatcattttatttgcaaagaaatgcgcaaattttttgaaagg |
139 |
Q |
| |
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|||||| ||||||||||||||| || ||||||||||| || ||| ||| | ||||| |||||||||||||||||||| | ||||| ||||||||||| |
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| T |
23912136 |
catataggataccaaaatcaatgatatgaagggtttcagcatttgcagaagctttcataatcattttatttgcaaagaagtatgcaaactttttgaaagg |
23912235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 372
Target Start/End: Complemental strand, 23904611 - 23904495
Alignment:
| Q |
256 |
cattcgcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattagcagtcctattgtcatt |
355 |
Q |
| |
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|||| |||||||||||||||| || ||||||||||| || | || |||||||| | |||||||||||| || | ||||||||| | ||||||||||| |
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| T |
23904611 |
cattggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttctattgtcatt |
23904512 |
T |
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| Q |
356 |
agcagatacagcttgtg |
372 |
Q |
| |
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||| | | |||||||| |
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| T |
23904511 |
ggcatacatagcttgtg |
23904495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 372
Target Start/End: Original strand, 23912358 - 23912474
Alignment:
| Q |
256 |
cattcgcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattagcagtcctattgtcatt |
355 |
Q |
| |
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|||| |||||||||||||||| || |||| | |||| || || || |||||||| | |||||||||||||| | ||||||||| |||| |||||||| |
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| T |
23912358 |
cattggcaaagtaatgagccaacctttgtggtccatccccagagggtgaagaatgttgcctaatctgcttcagtagctcattagcattcctgttgtcatt |
23912457 |
T |
|
| Q |
356 |
agcagatacagcttgtg |
372 |
Q |
| |
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||| | |||| ||||| |
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| T |
23912458 |
ggcatacacagattgtg |
23912474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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