View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0777_low_9 (Length: 449)

Name: NF0777_low_9
Description: NF0777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0777_low_9
NF0777_low_9
[»] chr8 (5 HSPs)
chr8 (197-428)||(31369425-31369656)
chr8 (250-428)||(31403700-31403878)
chr8 (234-429)||(31381673-31381868)
chr8 (28-105)||(31369256-31369333)
chr8 (248-358)||(31420069-31420179)
[»] chr1 (1 HSPs)
chr1 (250-428)||(33620680-33620858)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 197 - 428
Target Start/End: Original strand, 31369425 - 31369656
Alignment:
Q  197 aagaactttatacttgtatatagtaaataaggcaataaacaacttacaggacagtttcacaaaagaccacaaatttttgatcaggtgagactgcaactcc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31369425 aagaactttatacttgtatatagtaaataaggcaataaacaacttacaggacagtttcacaaaagaccacaaatttttgatcaggtgagactgcaactcc 31369524  T
Q  297 attaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggattataactcaaaaacctaccattagggttgccttcgaatacatctagg 396  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31369525 attaggaaagtagaggtcactgactagtagtgttgtcttttttgttgctggattataactcaaaaacctaccattagggttgccttcgaatacatctagg 31369624  T
Q  397 agataatccttatacgagtattttgatgaagc 428  Q
    ||||||||||||||||||||||||||||||||    
T  31369625 agataatccttatacgagtattttgatgaagc 31369656  T

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Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 250 - 428
Target Start/End: Original strand, 31403700 - 31403878
Alignment:
Q  250 gtttcacaaaagaccacaaatttttgatcaggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggat 349  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31403700 gtttcacaaaagaccacaaaattttgatcaggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggat 31403799  T
Q  350 tataactcaaaaacctaccattagggttgccttcgaatacatctaggagataatccttatacgagtattttgatgaagc 428  Q
    ||||||||||||||||||||||||| || ||||| |||| |||||||| | |||||||    |||||||||||||||||    
T  31403800 tataactcaaaaacctaccattaggttttccttctaatatatctaggacagaatccttgattgagtattttgatgaagc 31403878  T

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Target: chr8; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 234 - 429
Target Start/End: Original strand, 31381673 - 31381868
Alignment:
Q  234 aacaacttacaggacagtttcacaaaagaccacaaatttttgatcaggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtc 333  Q
    ||||||||||| |  ||||||||||||||||||||| || ||||| |||||||||||||||||||||| || ||||||||| || |||||||| ||||||    
T  31381673 aacaacttacatggaagtttcacaaaagaccacaaaattctgatctggtgagactgcaactccattagcaatgtagaggtctctgactagtagggttgtc 31381772  T
Q  334 ttttttgttgctggattataactcaaaaacctaccattagggttgccttcgaatacatctaggagataatccttatacgagtattttgatgaagct 429  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||| | ||||||| || |||||||| |||||||||    
T  31381773 ttttttgttgctggattataactaaaaaacctaccattagggtttccttctaatatatctaggacagaatccttgtatgagtatttggatgaagct 31381868  T

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Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 31369256 - 31369333
Alignment:
Q  28 gcaagtaaggaggcttgagcccaattttcaataaaccacactcagtttgatggaaatttatttgagaatatgtatgct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31369256 gcaagtaaggaggcttgagcccaattttcaataaaccacactcagtttgatggaaatttatttgagaatatgtatgct 31369333  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 358
Target Start/End: Original strand, 31420069 - 31420179
Alignment:
Q  248 cagtttcacaaaagaccacaaatttttgatcaggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctgg 347  Q
    ||||||||||  |||| |||||||||||||||||||  | |||||||| ||||| ||||||||||| ||   | |||| |||   |||||||||||||||    
T  31420069 cagtttcacagtagacgacaaatttttgatcaggtgcaattgcaactcgattagcaaagtagaggttacgggcaagtaatgtaaccttttttgttgctgg 31420168  T
Q  348 attataactca 358  Q
    |||||| ||||    
T  31420169 attatagctca 31420179  T

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Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 250 - 428
Target Start/End: Original strand, 33620680 - 33620858
Alignment:
Q  250 gtttcacaaaagaccacaaatttttgatcaggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggat 349  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  33620680 gtttcacaaaagaccacaaaattttgatcaggtgagactgcaactccattaggaaagtagaggtcactgactagcagggttgtcttttttgttgctggat 33620779  T
Q  350 tataactcaaaaacctaccattagggttgccttcgaatacatctaggagataatccttatacgagtattttgatgaagc 428  Q
    ||||||||||||||||||||||||| || ||||| |||| |||||||| | |||||||    |||||||||||||||||    
T  33620780 tataactcaaaaacctaccattaggttttccttctaatatatctaggacagaatccttgattgagtattttgatgaagc 33620858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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