View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_high_12 (Length: 512)
Name: NF0778_high_12
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Complemental strand, 35956288 - 35955813
Alignment:
| Q |
15 |
ggcacatgaagggagaggagtccaattccgggctatgaagcatgaccggcactggacatgacactacagttacacgtagacaccagaaataatttgcgaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35956288 |
ggcacatgaagggagaggagtccaattccgggctatgaagcatgaccggcactggacatgacactacagttacacgtagacaccagaaataatttgcgaa |
35956189 |
T |
|
| Q |
115 |
aataaaagtaattgaatgtgaccacatgcgacagtgtcatgttggtgccctaaagcaacacatatgaacactggagacaccttcaatttaaattgttgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
35956188 |
aataaaagtaattgaatgtgaccacatgcgacagtgtcgtgttggtgccctaaaccaacacatatgaacactggagacaccttcaatttgaagtgttgat |
35956089 |
T |
|
| Q |
215 |
tcttcatggattccaggtgtggaggggttatttctttctttcttacttatcacatttttgggatattagatatatttgcagatgatgcgtaaacaaacat |
314 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35956088 |
tcttcatggattccaggtgtcgaggggttatttctttctttcttacttatcacatttttgggatattagatatatttgcagatgatgcgtaaacaaacat |
35955989 |
T |
|
| Q |
315 |
aaagaaagcaaatgcaatttcaccatagatatttgaacatttggggcccgaaggattaatctatggcaacaaacacaaatgtaaagcggcgtaaaatcat |
414 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
35955988 |
aaagaaagcaaatgcaatctcaccatagatatttgaacatttggggcctgaaggattaatctatggcaacaaacacaaatgtaaaacagcgtaaaatcat |
35955889 |
T |
|
| Q |
415 |
gaaagaaaacaacacataagctaaagatgatagggaaatacctattacacacaagcgtgaggacggttttgatgat |
490 |
Q |
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| T |
35955888 |
gaaagaaaacaacacataagctaaagatgatagggaaatacctattacacacaagcgtgaggacggtttttatgat |
35955813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Complemental strand, 33904871 - 33904396
Alignment:
| Q |
15 |
ggcacatgaagggagaggagtccaattccgggctatgaagcatgaccggcactggacatgacactacagttacacgtagacaccagaaataatttgcgaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904871 |
ggcacatgaagggagaggagtccaattccgggctatgaagcatgaccggcactggacatgacactacagttacacgtagacaccagaaataatttgcgaa |
33904772 |
T |
|
| Q |
115 |
aataaaagtaattgaatgtgaccacatgcgacagtgtcatgttggtgccctaaagcaacacatatgaacactggagacaccttcaatttaaattgttgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
33904771 |
aataaaagtaattgaatgtgaccacatgcgacagtgtcgtgttggtgccctaaaccaacacatatgaacactggagacaccttcaatttgaagtgttgat |
33904672 |
T |
|
| Q |
215 |
tcttcatggattccaggtgtggaggggttatttctttctttcttacttatcacatttttgggatattagatatatttgcagatgatgcgtaaacaaacat |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904671 |
tcttcatggattccaggtgtcgaggggttatttctttctttcttacttatcacatttttgggatattagatatatttgcagatgatgcgtaaacaaacat |
33904572 |
T |
|
| Q |
315 |
aaagaaagcaaatgcaatttcaccatagatatttgaacatttggggcccgaaggattaatctatggcaacaaacacaaatgtaaagcggcgtaaaatcat |
414 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33904571 |
aaagaaagaaaatgcaatttcaccatagatatttgaacatttggggcctgaaggattaatctatggcaacaaacacaaatgtaaaaaggcgtaaaatcat |
33904472 |
T |
|
| Q |
415 |
gaaagaaaacaacacataagctaaagatgatagggaaatacctattacacacaagcgtgaggacggttttgatgat |
490 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33904471 |
gaaagaaaacaacacataagctaaagatgatagggaaatacctattacacacaagcgtgaggacggtttttatgat |
33904396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 9018932 - 9018879
Alignment:
| Q |
90 |
gtagacaccagaaataatttgcgaaaataaaagtaattgaatgtgaccacatgc |
143 |
Q |
| |
|
||||||||||| | ||||||| |||||| ||||||||||||||| ||||||||| |
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| T |
9018932 |
gtagacaccagtagtaatttgagaaaatgaaagtaattgaatgtaaccacatgc |
9018879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 10042288 - 10042340
Alignment:
| Q |
90 |
gtagacaccagaaataatttgcgaaaataaaagtaattgaatgtgaccacatg |
142 |
Q |
| |
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||||||||||| ||||||||| ||||||| |||| ||||||||| |||||||| |
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| T |
10042288 |
gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaaccacatg |
10042340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 18542270 - 18542221
Alignment:
| Q |
93 |
gacaccagaaataatttgcgaaaataaaagtaattgaatgtgaccacatg |
142 |
Q |
| |
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|||||||| ||||||||| ||||||| |||||||||||||| | |||||| |
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|
| T |
18542270 |
gacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatg |
18542221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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