View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_high_15 (Length: 504)
Name: NF0778_high_15
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 6358578 - 6359020
Alignment:
| Q |
1 |
atcatgattttatcatatagctgcatgctt-gcccaattcagtgttggcttttgagggaaagatagcatcagtaggtgatttgtagcat-----caaagg |
94 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
6358578 |
atcatgattttatcatatagctgcatgctttgcccaattcagtgttggcttttgagggaaagatagcatcagtaggtgatttgcagcatgtacccaaagg |
6358677 |
T |
|
| Q |
95 |
aactgaggtatgtgttttattttt--------tatctcgtctaagtagaagttaccatttgcaataataagttcacttatagagcaagaaatgtcattca |
186 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6358678 |
aactgaggtatgtgttttttttttattttttttatctcgtctaagtagaagttaccatttgcaataataagttcacttatagagcaagaaatgtcattca |
6358777 |
T |
|
| Q |
187 |
aagattatttatgcatactcagcaaaacttggattcgagacctttgnnnnnnnnnnnnn------cttgatctgtctaaactgaagatggaaaatcattc |
280 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6358778 |
aagattatttatgcatactcagcaaaacttggattcgagaccttttttttttttttttttttcttcttgatctgtctaaactgaagatggaaaatcattc |
6358877 |
T |
|
| Q |
281 |
caatgccaagaatgtgggttagttaggtacaaggaacagataaagcaaatttcaaccggaataaaatcactttcaaaagaagcttctaatccttcttcta |
380 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6358878 |
caatgccaagaatgtgggttagttaggtacaaggaatagataaagcaaatttcaaccggaataaaatcactttcaaaagaagcttctaatccttcttcta |
6358977 |
T |
|
| Q |
381 |
gtaacaatatcatttaacatttctgactataacttgtacctgc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6358978 |
gtaacaatatcatttaacatttctgactataacttgtacctgc |
6359020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 495
Target Start/End: Original strand, 6359029 - 6359060
Alignment:
| Q |
464 |
ctttttatgtcttaccctttctgtatattctt |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
6359029 |
ctttttatgtcttaccctttctgtatattctt |
6359060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 32857631 - 32857478
Alignment:
| Q |
264 |
aagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaacagataaagcaaatttcaaccggaataaaatcactttcaaaagaagc |
363 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||| | |||||||| || | | ||||||| |
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| T |
32857631 |
aagatggaaaagcatttcaatgccaagaatgtgggttagttagagacaaggaagagataaagcaaattgcaactgaaataaaatttctattagaagaagc |
32857532 |
T |
|
| Q |
364 |
ttctaatccttcttctagtaacaatatcatttaacatttctgactataacttgt |
417 |
Q |
| |
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|||||| |||||||| | | || |||| ||||||||||||||||| ||||||| |
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|
| T |
32857531 |
ttctaagccttcttccaatggcagtatcctttaacatttctgactagaacttgt |
32857478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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