View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_high_18 (Length: 437)
Name: NF0778_high_18
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 11738155 - 11737757
Alignment:
| Q |
11 |
cataggttctgatcgatgttgacaaagaggatcatacctgatttattagcattactgattagctcatactttgcagagaacatatccacatatgtgaaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11738155 |
cataggttctgatcgatgttgacaaagaggatcatacctgatttattagcattactgattagctcatactttgcagagaacatatccacataggtgaaag |
11738056 |
T |
|
| Q |
111 |
aagcatcatggaactgttcccttaatttgacaactatatctttaagctttttattgaactctttggccaagtcgttctgcgaattgacgcagccgttttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11738055 |
aagcatcatggaactgttcccttaatttgacaactatatctttaagctttttattgaactctttggccaagtcgttctgcgaattgacgcagccgttttg |
11737956 |
T |
|
| Q |
211 |
atcaagataaccaaccacttgagtttggttgttatgtgcattgtgaatgggcattgccaccggaaggcaaccaatgggtcctgtgttgtgtatccggaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
11737955 |
atcaagataaccaaccacttgagtttggttgttatgtgcattgtgaatgggcattgccactggaaggcaaccaataggtcctgtgttgtgtatccagaat |
11737856 |
T |
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| Q |
311 |
gtccttgctccgaaaaaatgtagactctgccaatttattcttttattaatatacttgccagaaaataagcataaattcattatgacagtataactaact |
409 |
Q |
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| T |
11737855 |
gtccttgctccgaaaaaatgtagactctgccaatttattcttttattaatttacttgccagaaaataagcataaattcattataacagtataactaact |
11737757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 11744121 - 11743810
Alignment:
| Q |
11 |
cataggttctgat-cgatgttgacaaagaggatcatacctgatttattagcattactgattagctcatactttgcagagaacatatccacatatgtgaaa |
109 |
Q |
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||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11744121 |
cataggttcagattcgatgttgacaaagagaatcatacctgatttattagcattactgattagctcatactttgcagagaacatgtccacatatgtgaaa |
11744022 |
T |
|
| Q |
110 |
gaagcatcatggaactgttcccttaatttgacaactatatctttaagctttttattgaactctttggccaagtcgttctgcgaattgacgcagccgtttt |
209 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| ||| | ||| || |||||||||| |
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| T |
11744021 |
gaagcatcatggaactgttcccttaatttgacaacaacatctttaagctttttattgaactctctggccaagttgtttgggtgattaacacagccgtttt |
11743922 |
T |
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| Q |
210 |
gatcaagataaccaaccacttgagtttggttgtt-atgtgcattgtgaatgggcattgccaccggaaggcaaccaatgggtcctgtgttgtgtatccgga |
308 |
Q |
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| T |
11743921 |
gatcaagataaccagccacttgagtttggctgttgatg-gcattgtgaatgggcatgaatactggaaggcaaccaattgggcctgtattgtgtatccaga |
11743823 |
T |
|
| Q |
309 |
atgtccttgctcc |
321 |
Q |
| |
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|| |||||||||| |
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|
| T |
11743822 |
atttccttgctcc |
11743810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 10545588 - 10545621
Alignment:
| Q |
272 |
ggaaggcaaccaatgggtcctgtgttgtgtatcc |
305 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |
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| T |
10545588 |
ggaagacaaccaatgggtcctgtgttgtgtatcc |
10545621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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