View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_high_20 (Length: 426)

Name: NF0778_high_20
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_high_20
NF0778_high_20
[»] chr3 (2 HSPs)
chr3 (78-355)||(25516707-25516981)
chr3 (219-360)||(21156297-21156434)
[»] chr4 (4 HSPs)
chr4 (254-369)||(37781762-37781876)
chr4 (255-362)||(873607-873713)
chr4 (254-328)||(54867082-54867157)
chr4 (252-315)||(3991920-3991984)
[»] chr2 (12 HSPs)
chr2 (219-328)||(2869818-2869927)
chr2 (218-345)||(3277869-3277993)
chr2 (252-338)||(28770888-28770974)
chr2 (220-369)||(16388554-16388702)
chr2 (260-338)||(5699691-5699769)
chr2 (247-315)||(8390286-8390354)
chr2 (216-306)||(16388312-16388399)
chr2 (252-308)||(39482828-39482884)
chr2 (258-331)||(20522124-20522196)
chr2 (254-315)||(23078608-23078669)
chr2 (204-315)||(13569181-13569289)
chr2 (252-348)||(18674505-18674600)
[»] chr5 (4 HSPs)
chr5 (219-360)||(5611010-5611147)
chr5 (222-348)||(30899728-30899854)
chr5 (204-333)||(34842457-34842582)
chr5 (221-332)||(28537489-28537604)
[»] chr6 (6 HSPs)
chr6 (162-350)||(30519123-30519307)
chr6 (252-334)||(28301082-28301164)
chr6 (252-334)||(28510909-28510991)
chr6 (276-361)||(33721650-33721735)
chr6 (254-315)||(22963599-22963660)
chr6 (254-315)||(23824733-23824794)
[»] scaffold0076 (1 HSPs)
scaffold0076 (276-369)||(16071-16165)
[»] chr1 (4 HSPs)
chr1 (254-328)||(29651710-29651784)
chr1 (252-327)||(48382607-48382683)
chr1 (271-338)||(32737110-32737177)
chr1 (260-338)||(35109649-35109727)
[»] chr7 (3 HSPs)
chr7 (252-315)||(46516447-46516510)
chr7 (219-334)||(28617343-28617457)
chr7 (252-328)||(2647820-2647896)
[»] chr8 (3 HSPs)
chr8 (241-331)||(6813567-6813658)
chr8 (257-314)||(5990699-5990756)
chr8 (287-340)||(34477330-34477383)
[»] scaffold0148 (1 HSPs)
scaffold0148 (254-328)||(10628-10702)
[»] scaffold0006 (1 HSPs)
scaffold0006 (254-328)||(2392-2465)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 78 - 355
Target Start/End: Original strand, 25516707 - 25516981
Alignment:
Q  78 ccagcagagcgaatagcagatatagatgtatatactttcatttttctctttacaaactactacaactacattattaatagaatttgttgtgaattggaac 177  Q
    ||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25516707 ccagcggagcgaatagcagatatacatttatatactttcatttgtctctttacaaactactacaactacattattaatagaatttgttgtgaatttgaac 25516806  T
Q  178 aggtaattataccaataaatctttattgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagactta 277  Q
     |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  25516807 tggtaatcataccaataaatctttattgtgttgagtaaagaaagtagtaatcaataagtaaagtagtctcaaat---aacaacaacaaaaaatagactta 25516903  T
Q  278 gatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacatacca 355  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  25516904 gatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaaggataagaaagaagagagggaaaacaacacacca 25516981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 360
Target Start/End: Original strand, 21156297 - 21156434
Alignment:
Q  219 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 318  Q
    |||||||||||||| ||||||||||||| ||  ||||| || |||||| ||   || |||||| ||| |||||||||||||| ||| |||||||||| ||    
T  21156297 aagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaa---acctagatctaagagtgaaacaacaccataagaatattcaaagcaa 21156393  T
Q  319 caaggataagaaagaagagagggaaaacaacataccagtatt 360  Q
    ||| ||||||||||||| ||  |||||||||| |||| ||||    
T  21156394 caaagataagaaagaaggga-agaaaacaacacaccaatatt 21156434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 369
Target Start/End: Original strand, 37781762 - 37781876
Alignment:
Q  254 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacatac 353  Q
    |||||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||| || |||  |||||||||| ||    
T  37781762 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaataataga-agaaaacaacaaac 37781860  T
Q  354 cagtattatctaccca 369  Q
    || |||| | ||||||    
T  37781861 caatattgtttaccca 37781876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 873713 - 873607
Alignment:
Q  255 aacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacatacc 354  Q
    ||||||||||| |||  |||||| ||| ||||||||||||||||||||| ||||||||||  ||| | ||||||||| |||| | || |||||||| |||    
T  873713 aacaacaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaaacaagataagg-aaacaacacacc 873615  T
Q  355 agtattat 362  Q
    | ||||||    
T  873614 aatattat 873607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 54867082 - 54867157
Alignment:
Q  254 caacaacaacaaaaaat-agacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 328  Q
    ||||||||||||||||  |||| |||||| ||||||  | |||||||||||||||| ||||||||| || ||||||    
T  54867082 caacaacaacaaaaaaacagacatagatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataag 54867157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 3991920 - 3991984
Alignment:
Q  252 aacaacaacaacaaaaaataga-cttagatcgaagtgtgaaacaacaccacaagcatattcaaag 315  Q
    |||||||||||||| ||| | | |||||||| ||||||||| |||||| ||||||||||| ||||    
T  3991920 aacaacaacaacaacaaacaaagcttagatctaagtgtgaagcaacactacaagcatatttaaag 3991984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 2869927 - 2869818
Alignment:
Q  219 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 318  Q
    ||||||| |||||| ||||||||||  ||||| |||||||||||||| |||||||| || ||| ||||||  | |||||||| |||||||||||||| ||    
T  2869927 aagtagtgatcaatgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagcaa 2869828  T
Q  319 caaggataag 328  Q
    ||| ||||||    
T  2869827 caaagataag 2869818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 3277869 - 3277993
Alignment:
Q  218 aaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagta 317  Q
    ||||||||||||||| || |||||| || |||  ||||||||||||   |||||||  |||||| ||||||||| |||||| |||| ||||||||||| |    
T  3277869 aaagtagtaatcaattagcaaagtaatcacaagaaacaacaacaac---aaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagca 3277965  T
Q  318 acaaggataagaaagaagagagggaaaa 345  Q
    | || ||||||||| |||||||||||||    
T  3277966 aaaaagataagaaataagagagggaaaa 3277993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 28770974 - 28770888
Alignment:
Q  252 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 338  Q
    ||||||||| |||| |||||||| |||||| ||||||||| |||||||||||||||| |||||| || ||  |||| ||||||||||    
T  28770974 aacaacaactacaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagaga 28770888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 369
Target Start/End: Complemental strand, 16388702 - 16388554
Alignment:
Q  220 agtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaac 319  Q
    ||||||||||||| ||||||||||||||||  | || ||||||||| ||| |||| |||||  | ||||||| |||||| | |||||||| ||||| ||     
T  16388702 agtagtaatcaatgagtaaagtagtctcaagcagcagcaacaacaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaat 16388603  T
Q  320 aaggataagaaagaagagagggaaaacaacataccagtattatctaccca 369  Q
    || ||||||| |||| ||  ||||||||||| |||| |||| | ||||||    
T  16388602 aaagataagagagaa-aggaggaaaacaacacaccaatattgtttaccca 16388554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 338
Target Start/End: Original strand, 5699691 - 5699769
Alignment:
Q  260 caacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 338  Q
    |||||| |||||||| |||||| |||||| || ||||||||||||| ||||||||| | ||| ||||||| | ||||||    
T  5699691 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagcagcaacgataagataaaagaga 5699769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 8390354 - 8390286
Alignment:
Q  247 caaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 315  Q
    |||| |||||||||||||||||  |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  8390354 caaacaacaacaacaacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaag 8390286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 16388312 - 16388399
Alignment:
Q  216 agaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagca 306  Q
    ||||||||||||||||| | ||||||||||||||  | ||||||||||||| ||   || || ||  |||||||||||||||| |||||||    
T  16388312 agaaagtagtaatcaatgaataaagtagtctcaagcagcaacaacaacaaacaa---acatatatataagtgtgaaacaacactacaagca 16388399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 39482828 - 39482884
Alignment:
Q  252 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcata 308  Q
    |||||||||||||||||| |||| || ||| ||||||  ||||||||||||||||||    
T  39482828 aacaacaacaacaaaaaacagacctaaatctaagtgtagaacaacaccacaagcata 39482884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 20522124 - 20522196
Alignment:
Q  258 aacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaa 331  Q
    |||||||||||| |||| |||||| ||||||  | |||||||||||||||| |||||| || || |||||||||    
T  20522124 aacaacaaaaaa-agacatagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagaaa 20522196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 23078669 - 23078608
Alignment:
Q  254 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 315  Q
    |||||||||||||||| | || |||||| ||||||  | |||||||||||||||| ||||||    
T  23078669 caacaacaacaaaaaacatacctagatctaagtgtagagcaacaccacaagcataatcaaag 23078608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 13569181 - 13569289
Alignment:
Q  204 tgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaa 303  Q
    ||||| ||||| || |||| |||||||||  ||||||| ||||| ||  ||||||||||||||||| || |||||||| |||| |  |  ||||||||||    
T  13569181 tgtgtggagtaaaggaagtggtaatcaatgtgtaaagt-gtctccaa--acaacaacaacaaaaaacaggcttagatctaagtatagagaaacaccacaa 13569277  T
Q  304 gcatattcaaag 315  Q
    ||||| ||||||    
T  13569278 gcataatcaaag 13569289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 18674600 - 18674505
Alignment:
Q  252 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaa 348  Q
    ||||||||||| || ||| |||| |||||  |||||||||  |||||||| ||||||||| ||  ||||| ||||||||| ||||||  ||||||||    
T  18674600 aacaacaacaataacaaacagacctagatttaagtgtgaagtaacaccacgagcatattcgaaacaacaaagataagaaa-aagagaaagaaaacaa 18674505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 360
Target Start/End: Original strand, 5611010 - 5611147
Alignment:
Q  219 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 318  Q
    |||||||||||||| ||||||||||||| ||  ||||| || |||||| ||   || |||||| ||| |||||||||||||| ||| |||||||||| ||    
T  5611010 aagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaa---acctagatctaagagtgaaacaacaccataagaatattcaaagcaa 5611106  T
Q  319 caaggataagaaagaagagagggaaaacaacataccagtatt 360  Q
    ||| ||||||||||||| ||  |||||||||| |||| ||||    
T  5611107 caaagataagaaagaaggga-agaaaacaacacaccaatatt 5611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 348
Target Start/End: Original strand, 30899728 - 30899854
Alignment:
Q  222 tagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaa 321  Q
    ||||||||||| || ||||||| |||||  |||||||||||||| | |||||| |||||| |||||| || |||||||||||| |||  ||||  |||||    
T  30899728 tagtaatcaatgagcaaagtagcctcaagcaacaacaacaacaacacatagacctagatcaaagtgttaagcaacaccacaagtataaccaaaacaacaa 30899827  T
Q  322 ggataagaaagaagagagggaaaacaa 348  Q
     ||||  |||||||||| | |||||||    
T  30899828 agatacaaaagaagagaagaaaaacaa 30899854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 333
Target Start/End: Original strand, 34842457 - 34842582
Alignment:
Q  204 tgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaa 303  Q
    ||||| ||||| || ||||||||||||| | ||||||||| |||||  | ||||||||| ||| ||   || |||||| ||||||||| |||||||||||    
T  34842457 tgtgtggagtaaaggaagtagtaatcaaga-gtaaagtagcctcaagcagcaacaacaataaacaa---acctagatctaagtgtgaagcaacaccacaa 34842552  T
Q  304 gcatattcaaagtaacaaggataagaaaga 333  Q
    |||||| | ||| ||||| |||||||||||    
T  34842553 gcatatccgaagcaacaaagataagaaaga 34842582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 28537489 - 28537604
Alignment:
Q  221 gtagtaatcaataagtaaagtagtctcaa---ataacaacaacaac-aaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagt 316  Q
    |||||||||||| ||||||||||||||||   | |||||||||||| |||||| |||| || ||| |||||| ||||| |||||||| |||| ||||| |    
T  28537489 gtagtaatcaatgagtaaagtagtctcaagcaacaacaacaacaacaaaaaaacagacata-atctaagtgtaaaacagcaccacaaacataatcaaaat 28537587  T
Q  317 -aacaaggataagaaag 332  Q
     ||||| ||||||||||    
T  28537588 caacaaagataagaaag 28537604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 350
Target Start/End: Complemental strand, 30519307 - 30519123
Alignment:
Q  162 tgttgtgaattggaacaggtaattataccaataaatctttattgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaaca 261  Q
    ||||||||| | |||||  |||| |||||||||||| || | ||||| ||| | ||||| ||||||||||| |  ||| ||||||||||   ||||||||    
T  30519307 tgttgtgaaattgaacaaataatcataccaataaat-ttaaatgtgtggagcaaagaaaatagtaatcaatgatcaaaatagtctcaaa---caacaaca 30519212  T
Q  262 acaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaaca 350  Q
    |||| ||| | | ||||||  ||||||||| |||||||| || |||||| |||| ||||| ||||||||| ||||||  ||||||||||    
T  30519211 acaacaaacatatttagatttaagtgtgaagcaacaccataaacatatttaaagcaacaaagataagaaataagagaaagaaaacaaca 30519123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 28301164 - 28301082
Alignment:
Q  252 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaa 334  Q
    |||||||| ||||| ||| | || |||||||||||||||| |||||| |||| ||||||||||| ||||  ||||||||||||    
T  28301164 aacaacaagaacaataaacatacctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataagaaagaa 28301082  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 28510909 - 28510991
Alignment:
Q  252 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaa 334  Q
    |||||||| ||||| ||| | || |||||||||||||||| |||||| |||| ||||||||||| ||||  ||||||||||||    
T  28510909 aacaacaagaacaataaacatacctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataagaaagaa 28510991  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 361
Target Start/End: Complemental strand, 33721735 - 33721650
Alignment:
Q  276 tagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacataccagtatta 361  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||| ||||||| ||||  || | ||||||||| |||| |||||    
T  33721735 tagatctaagtgtgaaacatcaccacaaacatattcaaagcaacaaagataagagagaaaggaagaaaaacaacacaccaatatta 33721650  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 22963599 - 22963660
Alignment:
Q  254 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 315  Q
    |||||||||||||||| |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  22963599 caacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 22963660  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 23824794 - 23824733
Alignment:
Q  254 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 315  Q
    |||||||||||||||| |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  23824794 caacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 23824733  T

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Target: scaffold0076 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 369
Target Start/End: Complemental strand, 16165 - 16071
Alignment:
Q  276 tagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggat-aagaaagaagagagggaaaacaacataccagtattatctaccca 369  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||| ||| |||| ||||  || | ||||||||| |||| |||||| ||||||    
T  16165 tagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataaagagagaaaggaagaaaaacaacacaccaatattatttaccca 16071  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 29651710 - 29651784
Alignment:
Q  254 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 328  Q
    |||||||||||||||| ||||||||||| ||||||  | |||||||||||||||| |||||| || || ||||||    
T  29651710 caacaacaacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 29651784  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 48382683 - 48382607
Alignment:
Q  252 aacaacaac-aacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataa 327  Q
    ||||||||| || ||||||||||| |||||| ||||||||| ||||||||||| |||| | |||| ||||| |||||    
T  48382683 aacaacaaccaaaaaaaaatagacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataa 48382607  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 32737177 - 32737110
Alignment:
Q  271 agacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 338  Q
    ||||||||||| ||||||||| |||||||||||  ||| ||||||  |||| || |||||||||||||    
T  32737177 agacttagatctaagtgtgaagcaacaccacaaatataatcaaagctacaatgaaaagaaagaagaga 32737110  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 35109727 - 35109649
Alignment:
Q  260 caacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 338  Q
    |||||| ||| |||| |||||| ||||| | ||||||||||||| |||| | |||| ||||| || |||||||||||||    
T  35109727 caacaacaaacagacctagatctaagtgcggaacaacaccacaaacataattaaagaaacaaagagaagaaagaagaga 35109649  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 46516510 - 46516447
Alignment:
Q  252 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 315  Q
    |||||||||||||||||| ||||||| ||| |||||| || |||||||| ||||||| ||||||    
T  46516510 aacaacaacaacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaag 46516447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 28617457 - 28617343
Alignment:
Q  219 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaa-caacaccacaagcatattcaaagta 317  Q
    |||| ||||||||| |||||||||| |||||  ||||| ||||||||||  ||||| ||  ||  || || ||| ||||||||||||||||||||||| |    
T  28617457 aagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaaaa--tagacctaagtcttagagtaaaagcaacaccacaagcatattcaaagca 28617360  T
Q  318 acaaggataagaaagaa 334  Q
    |||| |||||| |||||    
T  28617359 acaaagataagcaagaa 28617343  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 2647896 - 2647820
Alignment:
Q  252 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 328  Q
    |||||||||||||||||| |||| || ||| |||| |  | |||||||||||||||| |||||| || || ||||||    
T  2647896 aacaacaacaacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagcaataaagataag 2647820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 6813567 - 6813658
Alignment:
Q  241 tagtctcaaataacaacaacaacaa-aaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaa 331  Q
    |||||||||  |||||||||||||| ||||||||||||  ||  |||||  ||||||| |||||||||| |||||| || || |||||||||    
T  6813567 tagtctcaatcaacaacaacaacaacaaaatagacttaagtcttagtgtagaacaacatcacaagcataatcaaagcaataaagataagaaa 6813658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 5990756 - 5990699
Alignment:
Q  257 caacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaa 314  Q
    ||||||||| |||||||| || ||| ||||||  ||||| ||||||||||||||||||    
T  5990756 caacaacaacaaatagacctaaatctaagtgtagaacaaaaccacaagcatattcaaa 5990699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 34477383 - 34477330
Alignment:
Q  287 gtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagg 340  Q
    |||||||||||| |||| |||| |||||| || || ||||||||||||||||||    
T  34477383 gtgaaacaacactacaaacatagtcaaagcaataaagataagaaagaagagagg 34477330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 10628 - 10702
Alignment:
Q  254 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 328  Q
    |||||||||||||||| |||| || ||| ||||||  | |||||||||||||||| |||||| || || ||||||    
T  10628 caacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 10702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 2392 - 2465
Alignment:
Q  254 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 328  Q
    |||||||||||||||  |||| |||||| ||||||  |||||||||||||||||| |||||| || || ||||||    
T  2392 caacaacaacaaaaac-agacctagatctaagtgtagaacaacaccacaagcataatcaaagcaataaagataag 2465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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