View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_high_26 (Length: 381)

Name: NF0778_high_26
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_high_26
NF0778_high_26
[»] chr8 (11 HSPs)
chr8 (1-374)||(31382481-31382854)
chr8 (5-374)||(5196527-5196898)
chr8 (79-216)||(38225122-38225260)
chr8 (120-243)||(37341545-37341669)
chr8 (140-235)||(25220130-25220225)
chr8 (149-199)||(42279506-42279556)
chr8 (117-166)||(14088734-14088783)
chr8 (148-233)||(26221114-26221198)
chr8 (154-201)||(40521752-40521799)
chr8 (107-202)||(26087100-26087196)
chr8 (173-201)||(44997243-44997271)
[»] chr6 (4 HSPs)
chr6 (5-375)||(10901161-10901533)
chr6 (150-240)||(13286566-13286656)
chr6 (117-270)||(30146445-30146599)
chr6 (157-201)||(6941223-6941267)
[»] chr7 (8 HSPs)
chr7 (8-374)||(5640450-5640817)
chr7 (279-374)||(42131859-42131948)
chr7 (138-238)||(20214714-20214816)
chr7 (111-238)||(28246129-28246257)
chr7 (173-242)||(39975146-39975216)
chr7 (149-201)||(14966329-14966381)
chr7 (149-201)||(15395801-15395853)
chr7 (149-201)||(46270024-46270076)
[»] chr4 (12 HSPs)
chr4 (5-374)||(35421196-35421562)
chr4 (5-374)||(53667991-53668364)
chr4 (107-239)||(903177-903310)
chr4 (106-230)||(12828958-12829083)
chr4 (149-201)||(26939132-26939184)
chr4 (173-272)||(3425563-3425662)
chr4 (140-199)||(42457506-42457565)
chr4 (109-166)||(23148477-23148535)
chr4 (152-201)||(18542567-18542616)
chr4 (155-201)||(43702848-43702894)
chr4 (149-201)||(30843218-30843270)
chr4 (149-201)||(41362259-41362311)
[»] chr2 (6 HSPs)
chr2 (5-374)||(9676389-9676761)
chr2 (5-372)||(31074758-31075124)
chr2 (5-374)||(35739983-35740353)
chr2 (107-269)||(20990376-20990539)
chr2 (105-252)||(34319055-34319203)
chr2 (149-201)||(3406740-3406792)
[»] chr3 (14 HSPs)
chr3 (5-374)||(12716450-12716820)
chr3 (88-311)||(42711063-42711287)
chr3 (1-64)||(42711285-42711348)
chr3 (195-272)||(26981581-26981658)
chr3 (149-201)||(51898701-51898753)
chr3 (79-134)||(26982388-26982443)
chr3 (278-374)||(49670347-49670438)
chr3 (149-201)||(3526393-3526445)
chr3 (328-372)||(42710994-42711038)
chr3 (149-201)||(43726189-43726241)
chr3 (149-201)||(39349750-39349802)
chr3 (149-201)||(42724699-42724751)
chr3 (136-166)||(26168880-26168910)
chr3 (152-201)||(38342016-38342065)
[»] chr1 (12 HSPs)
chr1 (5-257)||(25986108-25986360)
chr1 (152-374)||(18238674-18238894)
chr1 (5-136)||(18238877-18239008)
chr1 (5-83)||(34575638-34575716)
chr1 (149-201)||(10887862-10887914)
chr1 (322-374)||(25986386-25986438)
chr1 (149-201)||(28792017-28792069)
chr1 (152-201)||(42093227-42093276)
chr1 (149-201)||(35067430-35067482)
chr1 (150-201)||(26114774-26114825)
chr1 (152-201)||(50547733-50547782)
chr1 (173-201)||(32295874-32295902)
[»] chr5 (6 HSPs)
chr5 (107-239)||(17220024-17220158)
chr5 (149-201)||(35335989-35336042)
chr5 (149-201)||(30619247-30619299)
chr5 (149-201)||(36340560-36340612)
chr5 (151-201)||(29359734-29359784)
chr5 (173-201)||(38366490-38366518)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 31382481 - 31382854
Alignment:
Q  1 gctcttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31382481 gctcttgctccactagaagatttattattggtattaatcgaagtgaaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttca 31382580  T
Q  101 atttttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31382581 atttttaatggatggattcggattacataatccggatgtttttacacattccggattatataatccgaaatttgtaaatcaccccgttgaaagtcaacaa 31382680  T
Q  201 ataaggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatggattatatggaggatttctctag 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31382681 atagggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaatttggattgtataatccggaatggattatatggaggatttctctag 31382780  T
Q  301 tatgaccaatannnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||||||||          |||||||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  31382781 tatgaccaatttttttttttcttccaaaaacaagctttgaattgtataaaaagtggtttggaatattttgttgg 31382854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 5196898 - 5196527
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  5196898 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcatattttcttggttaatccatatgaaggaatttgttgatttcaattt 5196799  T
Q  105 ttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataa 204  Q
    | ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||| |||| || ||||||||||||||     
T  5196798 tcaatggatagattcggattacataatccggatctttttacacattctggattatataatccgaaatatgtaaatcccccctttaaaagtcaacaaatag 5196699  T
Q  205 ggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagtat 303  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||    
T  5196698 ggtgaaaaatgatgattccggattacataatccgaaatgcgttaaaacaattcggattttataatccagaatgtgattatatggaggatttatctagtat 5196599  T
Q  304 gaccaatannnnnnnnnc-ttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||||||         | ||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  5196598 gaccaatatttttttttctttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttgg 5196527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 38225260 - 38225122
Alignment:
Q  79 atgaaggaatttgtcgatttcaatttttaatggatggattcggattacataatccgga-tgtttttacacattccggattatataatcctaaatttgtaa 177  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||||||||| || | |||||||||||||||| ||||||||||||| |||| |||||    
T  38225260 atgaaggaatttgtcgatttcaattttcaacggatggattcagattacataattcgaactgtttttacacattccagattatataatccgaaatgtgtaa 38225161  T
Q  178 atcaccccgttgaaagtcaacaaataaggtgaaaaatga 216  Q
    |||| |||||||||||||| |||||  |||| |||||||    
T  38225160 atcatcccgttgaaagtcaccaaatggggtgcaaaatga 38225122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 37341669 - 37341545
Alignment:
Q  120 ggattacataatccgga-tgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataaggtgaaaaatgatg 218  Q
    |||||| |||||||| | || ||||||||||||||||||||||||||| |||| ||| ||||||| |||  ||||||||||  |  ||||||||||||||    
T  37341669 ggattatataatccgaactgcttttacacattccggattatataatccgaaatgtgtcaatcacctcgtaaaaagtcaacatttggggtgaaaaatgatg 37341570  T
Q  219 tttgcggattacataatccggaatg 243  Q
    |||  ||| || |||||||||||||    
T  37341569 tttttggaatatataatccggaatg 37341545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 25220225 - 25220130
Alignment:
Q  140 ttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataaggtgaaaaatgatgtttgcggattacataat 235  Q
    ||||||||||||||||||||| | ||| |||| ||| |||||||||||  ||||||||||  |  | |||||||  |||||||||||||| |||||    
T  25220225 ttttacacattccggattatacactccaaaatgtgtcaatcaccccgtaaaaagtcaacatttgggatgaaaaagtatgtttgcggattatataat 25220130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 42279556 - 42279506
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaaca 199  Q
    |||||||||||||||||  |||  |||||||||||||||||||||||||||    
T  42279556 ttccggattatataatctgaaacgtgtaaatcaccccgttgaaagtcaaca 42279506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 14088783 - 14088734
Alignment:
Q  117 ttcggattacataatccggatgtttttacacattccggattatataatcc 166  Q
    |||||||||||||||||||| |||| ||||| ||||||||||| ||||||    
T  14088783 ttcggattacataatccggaagtttatacactttccggattatgtaatcc 14088734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 26221114 - 26221198
Alignment:
Q  148 attccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataaggtgaaaaatgatgtttgcggattacata 233  Q
    |||||||||||| |||||  |||| ||||||||||| |||||||||||||| ||| |||||   ||||||| || |||||||||||    
T  26221114 attccggattatgtaatctaaaatgtgtaaatcacctcgttgaaagtcaacgaatgaggtg-ggaatgatgcttccggattacata 26221198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 40521752 - 40521799
Alignment:
Q  154 gattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    ||||||||||||| ||   |||||||||||||||||||||||||||||    
T  40521752 gattatataatccgaatagtgtaaatcaccccgttgaaagtcaacaaa 40521799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 26087100 - 26087196
Alignment:
Q  107 aatggatggattcggattacataatccggat-gtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaat 202  Q
    |||| ||||||||||| |||||||||  ||  |||||||||| |||| |||||| || | | || | ||| ||| ||||||||||||||||||||||    
T  26087100 aatgaatggattcggagtacataatctagaaagtttttacacgttccagattatgtatttcaaattgtgttaataaccccgttgaaagtcaacaaat 26087196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 44997243 - 44997271
Alignment:
Q  173 tgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||||||||||||||    
T  44997243 tgtaaatcaccccgttgaaagtcaacaaa 44997271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 10901161 - 10901533
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10901161 ttgctccactagaagattgattattagtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 10901260  T
Q  105 ttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataa 204  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||     
T  10901261 tcaatggatggattcggattacataatccggatgtttttacacattccggattatataatccgaaatatgtaaatcaccccgttgaaagtcaacaaatag 10901360  T
Q  205 ggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagtat 303  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||    
T  10901361 ggtgaaaaataatgtttccggattacataattcggaatgcgttaaaacaattcggactttataatccagaatgtgattatatggaggatttctctagtat 10901460  T
Q  304 gaccaatannnnnnnnnctt-ccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgga 375  Q
    ||||||||         ||| ||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  10901461 gaccaatatttttttttcttcccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttgga 10901533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 13286656 - 13286566
Alignment:
Q  150 tccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataaggtgaaaaatgatgtttgcggattacataatccgga 240  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||||||||||  |||| |||||||||||| ||||| ||||||||||||    
T  13286656 tccggattatgtaatccaaaatgtgtaaatcaccccgttgaaagtcaacaaatggggtggaaaatgatgttttcggatcacataatccgga 13286566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 270
Target Start/End: Complemental strand, 30146599 - 30146445
Alignment:
Q  117 ttcggattacataatccggat-gtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataaggtgaaaaatg 215  Q
    ||||||||| ||||| ||||| | |||||| |||||| ||||||||||||| |||| ||| ||| |||||||  ||||||||||  |  | ||||||| |    
T  30146599 ttcggattatataattcggattggttttacgcattccagattatataatccgaaatgtgttaatgaccccgtaaaaagtcaacatttgggatgaaaaaag 30146500  T
Q  216 atgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatc 270  Q
    |||||| ||||||| ||||||   |||| ||||||||||| | |||| |||||||    
T  30146499 atgttttcggattatataatctacaatgtgttaaaacaatccagattatataatc 30146445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 6941267 - 6941223
Alignment:
Q  157 tatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||| |||  |||||||||||||||||||||||| ||||    
T  6941267 tatataatccgaaaagtgtaaatcaccccgttgaaagtcagcaaa 6941223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 5640817 - 5640450
Alignment:
Q  8 ctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattttta 107  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  5640817 ctccactaaaagattggttattggtattaatcgaagtggaagtctcattcctattttcttggttaattcatatgaaggaatttgtcgatttcaattttca 5640718  T
Q  108 atggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataaggt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||    
T  5640717 atggatggattcggattacataatccggatgtttttacacattccggattatataatccgaaatatgtaaatcaccccgttgaaagtcaacaaatagggt 5640618  T
Q  208 gaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagtatgac 306  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  5640617 gaaaaatgatgtttccagattacataatccggaatgcgttaaaacaattcggattttataatccagaatgtgattatatggaggatttctctagtatgac 5640518  T
Q  307 caatannnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    |||||          ||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  5640517 caatattatttttttttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttgg 5640450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 42131859 - 42131948
Alignment:
Q  279 attatatggaggatttctctagtatgaccaatannnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||||||||||||||||| |||||||||||||          ||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  42131859 attatatggaggatttctccagtatgaccaatattgt------ttccagaaacaagctttgaattgcataaaaaatggttgggaatattttgttgg 42131948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 20214714 - 20214816
Alignment:
Q  138 gtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaat--aaggtgaaaaatgatgtttgcggattacataat 235  Q
    ||||||| || ||||| ||||| |||||| |||| ||| ||||| ||||| ||||||||||||||  |  |||| ||||||| ||| |||||||||||||    
T  20214714 gtttttaaactttccgaattatgtaatccgaaatgtgtcaatcatcccgtagaaagtcaacaaatggagtgtgagaaatgatatttccggattacataat 20214813  T
Q  236 ccg 238  Q
    |||    
T  20214814 ccg 20214816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 28246257 - 28246129
Alignment:
Q  111 gatggattcggattacataatccgga-tgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataaggtga 209  Q
    ||||||||||||||| | |||||||| || |||||||| || | |||||| |||||| |||  ||| ||||||| |||  ||||||||||  || |||||    
T  28246257 gatggattcggattatacaatccggactggttttacacttttcagattatgtaatccgaaaagtgtcaatcacctcgtaaaaagtcaacatttagggtga 28246158  T
Q  210 aaaatgatgtttgcggattacataatccg 238  Q
    | || |||||||  ||||| |||||||||    
T  28246157 ataaggatgtttctggatttcataatccg 28246129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 39975216 - 39975146
Alignment:
Q  173 tgtaaatcaccccgttgaaagtcaacaaataagg-tgaaaaatgatgtttgcggattacataatccggaat 242  Q
    |||||||||||||||||||||||||||||   || |||  ||||||| || ||||||| ||||||||||||    
T  39975216 tgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggtttcggattatataatccggaat 39975146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 14966381 - 14966329
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||| ||||||| ||||| |||  |||||||||||| ||||||||||||||||    
T  14966381 ttccagattataaaatccaaaaggtgtaaatcaccctgttgaaagtcaacaaa 14966329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 15395853 - 15395801
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||| ||||||| ||||| |||  |||||||||||| ||||||||||||||||    
T  15395853 ttccagattataaaatccaaaaggtgtaaatcaccctgttgaaagtcaacaaa 15395801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 46270024 - 46270076
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||| ||||  |||  |||||||||||| ||||||||||||||||    
T  46270024 ttccggattataaaatctgaaaggtgtaaatcacccagttgaaagtcaacaaa 46270076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 35421562 - 35421196
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35421562 ttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcaatttcaattt 35421463  T
Q  105 tt-aatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaata 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  35421462 ttcaatggatggattcggattacataatccggatgtttttacacattccggattatataatccgaaatatgtaaatcaccccgttgaaagtcaacaaata 35421363  T
Q  204 aggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagta 302  Q
     | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  35421362 ggatgaaaaatgatgtttccggattacataatccggaatgcattaaaacaattcggattttataatccggaatgtgattatatggaggatttctctagta 35421263  T
Q  303 tgaccaatannnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    |||||||||          ||| | |||||||||||||||||||||||||||||||  | ||||||||||||    
T  35421262 tgaccaatattttt-----ttcgagaaacaagctttgaattgcataaaaaatggttggggatattttgttgg 35421196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 374
Target Start/End: Original strand, 53667991 - 53668364
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53667991 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgttgatttcaattt 53668090  T
Q  105 ttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataa 204  Q
    | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||     
T  53668091 tcaatgtatggattaggattacataatccggatgtttttacacattccggattatataatccgaaatatgtaaatcaccccgttgaaagtcaacaaatag 53668190  T
Q  205 ggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagtat 303  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||    
T  53668191 ggtgaaaaatgatgattccggattacataatctggaatgcgttaaaacaattcggattttataatcaggaatgtgattatatggaggacttctctagtat 53668290  T
Q  304 gaccaata---nnnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||||||             |||||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  53668291 gaccaatattttttttttcttttccaaaaacaagctttgaattgcataaaatatggttgagaatattttgttgg 53668364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 903310 - 903177
Alignment:
Q  107 aatggatggattcggattacataatccgga-tgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataag 205  Q
    ||||||||||||| ||||| |||||||||| || |||||||| ||||||||||| |||| | |||  ||| ||||||||||| ||||||||||   |  |    
T  903310 aatggatggattcagattatataatccggactgattttacactttccggattatgtaattcgaaaagtgtcaatcaccccgtagaaagtcaacgtttggg 903211  T
Q  206 gtgaaaaatgatgtttgcggattacataatccgg 239  Q
    |||||||| ||||||| |||||||||||||||||    
T  903210 gtgaaaaaagatgttttcggattacataatccgg 903177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 12828958 - 12829083
Alignment:
Q  106 taatggatggattcggattacataatccgg-atgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataa 204  Q
    |||||||||||||| ||||| | ||||||| | |||||||||| ||||||||||| |||||| |||| ||| |||||||||||  |||||||| |  |      
T  12828958 taatggatggattcagattatacaatccggtaagtttttacactttccggattatgtaatccaaaatgtgtcaatcaccccgtaaaaagtcaatatttgg 12829057  T
Q  205 ggtgaaaaatgatgtttgcggattac 230  Q
    |||||||| |||||||| ||||||||    
T  12829058 ggtgaaaagtgatgtttccggattac 12829083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 26939184 - 26939132
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  26939184 ttccggattatataatccgaaacgtgtaaatcaccccgttgaaagtcaacaaa 26939132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 3425563 - 3425662
Alignment:
Q  173 tgtaaatcaccccgttgaaagtcaacaaataaggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccg 272  Q
    |||||||||||||||||||| | |||||||  | || |||||| |||||  |||||||||||||||||| | ||||||||  | |||||| |||||||||    
T  3425563 tgtaaatcaccccgttgaaaattaacaaatgggatggaaaatgttgtttctggattacataatccggaaagtgttaaaactgtccggattatataatccg 3425662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 42457506 - 42457565
Alignment:
Q  140 ttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaaca 199  Q
    ||||||||||||||||||||||||||  |||| ||| |||||||||||  ||||||||||    
T  42457506 ttttacacattccggattatataatctgaaatgtgtcaatcaccccgtaaaaagtcaaca 42457565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 23148477 - 23148535
Alignment:
Q  109 tggatggattcggattacataatccgga-tgtttttacacattccggattatataatcc 166  Q
    ||||||||||| ||||| |||||||||| || ||||||||| |||||||||||||||||    
T  23148477 tggatggattcagattatataatccggagtggttttacacaatccggattatataatcc 23148535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 18542567 - 18542616
Alignment:
Q  152 cggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    ||||||||||||||  |||  |||||||||||||||||||||||||||||    
T  18542567 cggattatataatctgaaacgtgtaaatcaccccgttgaaagtcaacaaa 18542616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 43702848 - 43702894
Alignment:
Q  155 attatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||  |||  |||||||||||||||||||||||||||||    
T  43702848 attatataatctgaaaagtgtaaatcaccccgttgaaagtcaacaaa 43702894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 30843218 - 30843270
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||| ||   ||||||||||||  |||||||||||||||    
T  30843218 ttccggattatataatccgaatagtgtaaatcaccctattgaaagtcaacaaa 30843270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 41362311 - 41362259
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||| ||||| |||  |||||||||||  ||||||||||||||||    
T  41362311 ttccggattataaaatccgaaaggtgtaaatcacctagttgaaagtcaacaaa 41362259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 9676761 - 9676389
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcatt--cctattttcttggttaatccatatgaaggaatttgtcgatttcaat 102  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||| |||||||||    
T  9676761 ttgctccactagaagattgattattgatattaatccaagtggaagtctcattttcctactttcttggttaatccatatgaaggaatttgttgatttcaat 9676662  T
Q  103 ttttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaat 202  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  9676661 ttttaatggatggattcggattacataatccggatgtttttagacattccggattatataatccgaaatatgtaaatcaccccgttgaaagtcaacaaat 9676562  T
Q  203 aaggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagt 301  Q
    | |||||||||||||| || |||||||||||||||| |||||||| |||||||||||||| |||||||  ||||| ||||||||| || |||||||||||    
T  9676561 agggtgaaaaatgatgattccggattacataatccgaaatgcgttgaaacaattcggattttataatctagaatgtgattatatgaagaatttctctagt 9676462  T
Q  302 atgaccaatannnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||||||||          ||||| ||| |||||||||||||||||||||||||||  ||||||||||||||    
T  9676461 atgaccaatattttttttttttccagaaataagctttgaattgcataaaaaatggttgggaatattttgttgg 9676389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 372
Target Start/End: Original strand, 31074758 - 31075124
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||    
T  31074758 ttgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctattttttggattcatccatatgaaggaatttgtcgatttcaattt 31074857  T
Q  105 ttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataa 204  Q
    | |||||||||||| ||||||||||||  | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||     
T  31074858 tcaatggatggatttggattacataatttgaatgtttttacacattccggattatataatccgaaatatgtaaatcaccccgttgaaagtcaacaaatag 31074957  T
Q  205 ggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagtat 303  Q
    | |||||||||||||||  ||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  31074958 gatgaaaaatgatgtttctggattacataatccgaaatgcgttaaaacaattcagattttataatccggaatgtgattatatggaggatttctctagtat 31075057  T
Q  304 gaccaatannnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgtt 372  Q
    ||||||||          ||||| ||||||||||||||||||||||||||||| |  ||||||||||||    
T  31075058 gaccaatatatttttt--ttccagaaacaagctttgaattgcataaaaaatggctgggaatattttgtt 31075124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 35740353 - 35739983
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  35740353 ttgctccacaagaagattgattattggtattaatcaaagtggaagtctcattcctattttcttggtta-tccatatgaaggaatttgttgatttcaattt 35740255  T
Q  105 ttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataa 204  Q
    | ||||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||     
T  35740254 tcaatggatggctttggattacataatccagatgtttttacacatttcggattatataatccgaaatatgtaaatcaccccgttgaaagtcaacaaatag 35740155  T
Q  205 ggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagtat 303  Q
    | |||||||||||| || |||||||||||||| ||||||||||||||||||| ||||| || |||| | |||| ||||||||||||||||||||||||||    
T  35740154 gatgaaaaatgatgcttccggattacataatctggaatgcgttaaaacaatttggattttaaaatctgaaatgtgattatatggaggatttctctagtat 35740055  T
Q  304 gaccaata-nnnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||| ||           ||||| ||||||||||||||||||||||||  |||||  ||||||||||||||    
T  35740054 gaccattatttttttttttttccataaacaagctttgaattgcataaaatgtggttgagaatattttgttgg 35739983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 20990376 - 20990539
Alignment:
Q  107 aatggatggattcggattacataatccggat-gtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataag 205  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||||||||||| |||||  |||| ||| ||| | ||||| ||||||||||||||| |    
T  20990376 aatggatggattcggattccataatccgaatagtttttacactttccggattatgtaatctgaaatgtgtcaattatcccgtagaaagtcaacaaatagg 20990475  T
Q  206 gtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataat 269  Q
    |||  ||||||||||| |||||||||||||| | || | ||||||| | ||| |||| ||||||    
T  20990476 gtgggaaatgatgttttcggattacataatctgaaaagtgttaaaaaatttcagattatataat 20990539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 34319055 - 34319203
Alignment:
Q  105 ttaatggatggattcggattacataatccggat-gtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaata 203  Q
    ||||||||||||||| |||| |||||||||||  ||||| |||| ||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||     
T  34319055 ttaatggatggattcagattccataatccggacagttttaacactttccggattatgtaatccgaaatgtgtaaatcatcccgttgaaagtcaacaaatg 34319154  T
Q  204 aggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaac 252  Q
     ||||  ||||||| ||| |||| || | |||||| || | ||||||||    
T  34319155 gggtgggaaatgatttttccggactatagaatccgaaaagtgttaaaac 34319203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 3406740 - 3406792
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||| ||||  |||| ||||||||||||| |||||||||||||||    
T  3406740 ttccggattataaaatctgaaatgtgtaaatcaccccattgaaagtcaacaaa 3406792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 374
Target Start/End: Original strand, 12716450 - 12716820
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    |||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  12716450 ttgctcaattagaagattgattattgatattaatcgaagtggaagtctcattcctattttcttggataatccatatgaaggaatttgttgatttcaattt 12716549  T
Q  105 ttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataa 204  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||  ||||||||||||| | ||     
T  12716550 tcaatggatggattcggattaaataatccggatgtttttacacattatggattatataatccgaaatatgtaaatcaccgtgttgaaagtcaacgattag 12716649  T
Q  205 ggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatggaggatttctctagtat 303  Q
    |||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||    
T  12716650 ggtgaaaaatgatgattccggattacataattcggaattcgttaaaacaattcggattttataatccggaatgtgattatatgaaggatttgtctagtat 12716749  T
Q  304 gaccaatannnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||||||          ||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  12716750 gaccaatattattattttttccacaaacaagctttgaattgcataaaaaatggttcggaatattttgttgg 12716820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 88 - 311
Target Start/End: Complemental strand, 42711287 - 42711063
Alignment:
Q  88 tttgtcgatttcaatttttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgt 187  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |    
T  42711287 tttgtcgatttcaattttcaatggatagattcggattacataattcggatgtttttacacattccggattatataatccgaaatatgtaaatcatcccat 42711188  T
Q  188 tgaaagtcaacaaataaggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccggaatg-gattatatg 286  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  42711187 tgaaaatcaacaaatagggtgaaaaatgatgtttccggattacataatccgaaatgcgttaaaacaattcggattttataattcggaatgtgattatatg 42711088  T
Q  287 gaggatttctctagtatgaccaata 311  Q
    |||||||||||||||||||||||||    
T  42711087 gaggatttctctagtatgaccaata 42711063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42711348 - 42711285
Alignment:
Q  1 gctcttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatttt 64  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  42711348 gctcttgctccactagaagattgattattggtaataatcgaagtggaagtctcattcctatttt 42711285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 26981658 - 26981581
Alignment:
Q  195 caacaaataaggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattcggattgtataatccg 272  Q
    ||||||||| ||||||||||||||||| |  |||||||||||||||||| ||||||||||| |||||| |||||||||    
T  26981658 caacaaatagggtgaaaaatgatgttttcaaattacataatccggaatgtgttaaaacaatccggattttataatccg 26981581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 51898753 - 51898701
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  51898753 ttccggattatataatccgaaacgtgtaaatcaccccgttgaaagtcaacaaa 51898701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 26982443 - 26982388
Alignment:
Q  79 atgaaggaatttgtcgatttcaatttttaatggatggattcggattacataatccg 134  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||    
T  26982443 atgaaggaatttgttgatttcaattttcaatggatggattcgaattatataatccg 26982388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 374
Target Start/End: Complemental strand, 49670438 - 49670347
Alignment:
Q  278 gattatatggaggatttctctagtatgaccaatannnnnnnnncttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||||||||||||||||||||||||||||| ||          ||||| ||| ||||||||||||||||||||| |||||  ||||||||||||||    
T  49670438 gattatatggaggatttctctagtatgaccattattttt-----ttccataaaaaagctttgaattgcataaaaagtggttgggaatattttgttgg 49670347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 3526393 - 3526445
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||| ||||| |||| |||||||||||||||||||| ||||||||    
T  3526393 ttccggattataaaatccgaaatgtgtaaatcaccccgttgaaactcaacaaa 3526445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 42711038 - 42710994
Alignment:
Q  328 aaacaagctttgaattgcataaaaaatggttttgaatattttgtt 372  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  42711038 aaacaagctttgaattgcataaaaaatggttgggaatattttgtt 42710994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 43726241 - 43726189
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||| ||   |||||||||||||||||||||||||||||    
T  43726241 ttccggattatataatccgaatagtgtaaatcaccccgttgaaagtcaacaaa 43726189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 39349802 - 39349750
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    ||||| |||||||||||| ||   |||||||||||||||||||||||||||||    
T  39349802 ttccgaattatataatccgaatagtgtaaatcaccccgttgaaagtcaacaaa 39349750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 42724751 - 42724699
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  42724751 ttccggattatatagtccgaaacgtgtagatcaccccgttgaaagtcaacaaa 42724699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 166
Target Start/End: Original strand, 26168880 - 26168910
Alignment:
Q  136 atgtttttacacattccggattatataatcc 166  Q
    |||||||||||||||||||||||||||||||    
T  26168880 atgtttttacacattccggattatataatcc 26168910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 38342065 - 38342016
Alignment:
Q  152 cggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    ||||||||| ||| | |||  |||||||||||||||||||||||||||||    
T  38342065 cggattataaaattcgaaaggtgtaaatcaccccgttgaaagtcaacaaa 38342016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 25986108 - 25986360
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  25986108 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctattttcttggttaattcatatgaaggaatttgttgatttcaattt 25986207  T
Q  105 ttaatggatggattcggattacataatccggatgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataa 204  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | ||| ||||||||||||||     
T  25986208 tcaatggatggattcggattacataatccggatgtttttacacattccggattatataatccgaaatatgtaaatcactctgttaaaagtcaacaaatag 25986307  T
Q  205 ggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaacaattc 257  Q
    |||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  25986308 ggtgaaaaatgatgattccggataacataatccggaatgcgttaaaacaattc 25986360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 152 - 374
Target Start/End: Complemental strand, 18238894 - 18238674
Alignment:
Q  152 cggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaataaggtgaaaaatgatgtttgcggattacataatccggaatgcgttaaaa 251  Q
    ||||||| |||||||  ||| |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  18238894 cggattaaataatccggaatatgtaaatcacaccgttgaaagtcaacaaatagggtgaaaaatgatgtttccggattacataatccggaatgcgttaaaa 18238795  T
Q  252 caattcggattgtataatccggaatg-gattatatggaggatttctctagtatgaccaatannnnnnnnncttccaaaaacaagctttgaattgcataaa 350  Q
    ||||||||||| ||||||  |||||| |||||||| |||||||||||||||||||||||||          || || |||||||||||||||||||||||    
T  18238794 caattcggattttataatatggaatgtgattatattgaggatttctctagtatgaccaatattttttt---tttcataaacaagctttgaattgcataaa 18238698  T
Q  351 aaatggttttgaatattttgttgg 374  Q
    ||||||||  ||||||||||||||    
T  18238697 aaatggttgggaatattttgttgg 18238674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 18239008 - 18238877
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 104  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18239008 ttgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaaggaatttgtcgatttcaattt 18238909  T
Q  105 ttaatggatggattcggattacataatccgga 136  Q
      ||||||||||||||||||| ||||||||||    
T  18238908 caaatggatggattcggattaaataatccgga 18238877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 34575716 - 34575638
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctattttcttggttaatccatatgaa 83  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34575716 ttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctattttcttggttaatccatatgaa 34575638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 10887914 - 10887862
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  10887914 ttccggattatataatccgaaaagtgtaaatcaccccgttgaaagtcaacaaa 10887862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 25986386 - 25986438
Alignment:
Q  322 ttccaaaaacaagctttgaattgcataaaaaatggttttgaatattttgttgg 374  Q
    ||||| |||||||||||||||||||||||||||||||   |||||||||||||    
T  25986386 ttccagaaacaagctttgaattgcataaaaaatggttggaaatattttgttgg 25986438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 28792017 - 28792069
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||| ||   |||||||||||||||||||||||||||||    
T  28792017 ttccggattatataatccgaatagtgtaaatcaccccgttgaaagtcaacaaa 28792069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 42093227 - 42093276
Alignment:
Q  152 cggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    ||||||||||||||| ||   |||||||||||||||||||||||||||||    
T  42093227 cggattatataatccgaatagtgtaaatcaccccgttgaaagtcaacaaa 42093276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 35067482 - 35067430
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||| | ||   |||||||||||||||||||||||||||||    
T  35067482 ttccggattatataattcgaatagtgtaaatcaccccgttgaaagtcaacaaa 35067430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 26114774 - 26114825
Alignment:
Q  150 tccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    ||||||||||| ||||  |||  |||||||||||||||||||||||||||||    
T  26114774 tccggattataaaatctgaaagatgtaaatcaccccgttgaaagtcaacaaa 26114825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 50547782 - 50547733
Alignment:
Q  152 cggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    ||||||||| ||||| |||  ||||||||||||| |||||||||||||||    
T  50547782 cggattataaaatccgaaaggtgtaaatcaccccattgaaagtcaacaaa 50547733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 32295874 - 32295902
Alignment:
Q  173 tgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||||||||||||||    
T  32295874 tgtaaatcaccccgttgaaagtcaacaaa 32295902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 239
Target Start/End: Original strand, 17220024 - 17220158
Alignment:
Q  107 aatggatggattcggattacataatccgga-tgtttttacacattccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaata-a 204  Q
    ||||||||||||| ||||| |  ||||||| || ||||| || ||||||||||| |||||| |||  ||| ||||||  |||||||||||||||||||      
T  17220024 aatggatggattcagattatacgatccggactggttttatactttccggattatgtaatcccaaaagtgtcaatcacgtcgttgaaagtcaacaaatagg 17220123  T
Q  205 ggtgaaaaatgatgtttgcggattacataatccgg 239  Q
    ||||||||| ||||||| |||| ||||||||||||    
T  17220124 ggtgaaaaaggatgttttcggactacataatccgg 17220158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 35336042 - 35335989
Alignment:
Q  149 ttccggattatat-aatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  35336042 ttccggattatattaatccgaaacttgtaaatcaccccgttgaaagtcaacaaa 35335989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 30619299 - 30619247
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||| |||  ||||||| ||||| |||||||||||||||    
T  30619299 ttccggattatataatccgaaacgtgtaaatgaccccattgaaagtcaacaaa 30619247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 36340612 - 36340560
Alignment:
Q  149 ttccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||  |||  ||||||||||| |||||||||||||||||    
T  36340612 ttccggattatataatctgaaacgtgtaaatcacctcgttgaaagtcaacaaa 36340560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 29359734 - 29359784
Alignment:
Q  151 ccggattatataatcctaaatttgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||| ||||| |||  ||||||||| |||||||||||||||||||    
T  29359734 ccggattataaaatccgaaaggtgtaaatcatcccgttgaaagtcaacaaa 29359784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 38366518 - 38366490
Alignment:
Q  173 tgtaaatcaccccgttgaaagtcaacaaa 201  Q
    |||||||||||||||||||||||||||||    
T  38366518 tgtaaatcaccccgttgaaagtcaacaaa 38366490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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