View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_high_38 (Length: 320)
Name: NF0778_high_38
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 39280023 - 39279741
Alignment:
| Q |
30 |
atgaaagcagtaaataatcaaataaaaaagagtgaggtaaaataggcatatacaatatatcattgatgaagctatcccatcacatacttatggcatcaac |
129 |
Q |
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| T |
39280023 |
atgaaagcagtaaataatcaaataaaaaagagtgaggtaaaataggcatatacaatatatcattgatgaagctatcccatcacatacttatggcatcaac |
39279924 |
T |
|
| Q |
130 |
ttgcttatttaagtgagatgcagatgaaattctatgaaataaaaaggagcaaaatagatccacatgtgaagatcaaatggcagtaaaatataaggagggg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39279923 |
ttgcttatttaagtgagatgcagatgaaattctatgaaataaaagggagcaaaatagatccacatgtgaagatcaaatggcagtaaaatataaggagggg |
39279824 |
T |
|
| Q |
230 |
tgagaatgaatttatatagtcctactgcatatttggaatcacggtgattttgacgaaatcacggtgacacggtgatattgttg |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39279823 |
tgagaatgaatttatatagtcctagtgcatatttggaatcacggtgattttgacgaaatcacggtgacacggtgattttgttg |
39279741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 31464721 - 31464803
Alignment:
| Q |
230 |
tgagaatgaatttatatagtcctactgcatatttggaatcacggtgattttgacgaaatcacggtgacacggtgatattgttg |
312 |
Q |
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||||||||| |||||||||||| |||| |||| |||||| ||| ||||| |||||||||||||||||||||| |||||| |
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| T |
31464721 |
tgagaatgagtttatatagtccagatgcagatttaaaatcactatgagtttgatgaaatcacggtgacacggtgattttgttg |
31464803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 19413261 - 19413311
Alignment:
| Q |
261 |
tttggaatcacggtgattttgacgaaatcacggtgacacggtgatattgtt |
311 |
Q |
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|||||||||| ||||| | |||||||||||||||||||| ||||| ||||| |
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| T |
19413261 |
tttggaatcatggtgagtgtgacgaaatcacggtgacactgtgattttgtt |
19413311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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