View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0778_high_4 (Length: 734)
Name: NF0778_high_4
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0778_high_4 |
 |  |
|
Alignment Details
Target: chr1 (Bit Score: 570; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 33 - 729
Target Start/End: Complemental strand, 25803379 - 25802664
Alignment:
Q |
33 |
attctttgactcattgtgattaagagtacccctgaaaacattatagttaagaaccctaagcaacg-tgtattgtccattataattaaccaaagnnnnnnn |
131 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
T |
25803379 |
attctttgactcattgtgagtaagagtacccctgaaaacattatagttaagaaccctaagcaacggtgtattgtccattataattaaccaaagaaaaaaa |
25803280 |
T |
 |
Q |
132 |
nntgtcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgccatttcaccaacaccatcaccatc------------- |
218 |
Q |
|
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
25803279 |
tatggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcaccaacaccatcaccatcaccatcaccatca |
25803180 |
T |
 |
Q |
219 |
-----gccatcgccatcgccaagccctaagttgtaccaaaacgtatgtaaagaacctggccaaaaagacttcgaacagcgttgtctgaaactaatagaat |
313 |
Q |
|
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
T |
25803179 |
ccatcgccatcgccatcaccaagccctaagttgtaccaaaacgtatgtaaagaacccggccaaaaagacttcgaacaacgttgcctgaagctaatagaat |
25803080 |
T |
 |
Q |
314 |
cttaccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagt |
413 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25803079 |
cttaccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagt |
25802980 |
T |
 |
Q |
414 |
cagagaaatcaccgaaaaatatccttcttctgatcccatcagagagtgttttgatgattacagtaccgtggttgttgaggtaaaaggtgcattggctgag |
513 |
Q |
|
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
25802979 |
cagagaaattactgaaaaatatccttcttctgatcccatcagagagtgttttgatgattacagtaccgtggttgttgaggtaaaaggagcattggctgag |
25802880 |
T |
 |
Q |
514 |
gatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttcca |
613 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25802879 |
gatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttcca |
25802780 |
T |
 |
Q |
614 |
ttgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaatttg |
713 |
Q |
|
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
25802779 |
ttgctacactgaatcatgagatggagttgtatactgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaaattg |
25802680 |
T |
 |
Q |
714 |
caattttcatctcact |
729 |
Q |
|
|
|||||||||||||||| |
|
|
T |
25802679 |
caattttcatctcact |
25802664 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 148 - 709
Target Start/End: Complemental strand, 23922811 - 23922262
Alignment:
Q |
148 |
tatttatcatttttgctcaccatttcaatgatgtttatttctcatgccatttcaccaacaccatcaccatcgccatcgccatcgccaagccctaagttgt |
247 |
Q |
|
|
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | ||| ||||| ||||||| |
|
|
T |
23922811 |
tatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacaccagcacca------------agccccaagttgt |
23922724 |
T |
 |
Q |
248 |
accaaaacgtatgtaaagaacctggccaaaaagacttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactttgatcgaagattatct |
347 |
Q |
|
|
||||||| ||||| |||| |||||| ||||||||||| ||||| |||||| ||||||| |||||| ||||||| |||| |||||||| ||||||||||| |
|
|
T |
23922723 |
accaaaatgtatgcaaagcacctggtcaaaaagactttgaacaacgttgtttgaaacttatagaagcttaccccaaaattactttgattgaagattatct |
23922624 |
T |
 |
Q |
348 |
aaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaatcaccgaaaaatatccttcttctgat |
447 |
Q |
|
|
|||||| ||||||||||||||||| || ||||||| | |||||| |||||||||||||| ||| | |||||| | ||||||||||||||||| | |
|
|
T |
23922623 |
tacctttgtcaggtcatttttaaagaatgcggcaataaagaaggcagtaaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaa |
23922524 |
T |
 |
Q |
448 |
cccatcagagagtgttttgatgattacagtaccgtggttgttgaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatg |
547 |
Q |
|
|
|| |||| ||| ||| |||||||||| | || ||||||| | | |||||| ||||||| ||| || ||||| |||| |||| | ||||||||| |
|
|
T |
23922523 |
ccaatcaaagaatgtgttgatgattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggacactatagacttggatatcaaatatg |
23922424 |
T |
 |
Q |
548 |
ctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgc |
647 |
Q |
|
|
|| |||||||| | | | ||| ||| |||||||||| |||||||| |||||||| ||| ||||||||||| |||||||||||||| |||| ||| |
|
|
T |
23922423 |
ctagtgatgcacttggtaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataa |
23922324 |
T |
 |
Q |
648 |
tgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaa |
709 |
Q |
|
|
|||||||||| ||||||| ||||| ||||||| ||| || ||||||||||| ||||||||| |
|
|
T |
23922323 |
tgatattgtattgatagccggaggccatctataaataaataaatttatatttcatgaataaa |
23922262 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 232 - 709
Target Start/End: Complemental strand, 23915102 - 23914625
Alignment:
Q |
232 |
ccaagccctaagttgtaccaaaacgtatgtaaagaacctggccaaaaagacttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactt |
331 |
Q |
|
|
||||||| |||||||||||||| ||||| ||| ||||||| || |||||||||||||| || ||||| |||||||||||| |||||||| ||| |||| |
|
|
T |
23915102 |
ccaagcctcaagttgtaccaaaatgtatgcaaacaacctggtcagaaagacttcgaacaacgctgtctcaaactaatagaaggttaccctccaattactt |
23915003 |
T |
 |
Q |
332 |
tgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaatcaccgaaaa |
431 |
Q |
|
|
||||| |||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| | |||||| | |||| |
|
|
T |
23915002 |
tgatcaaagattatcttaccttttgcaggtcatttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaa |
23914903 |
T |
 |
Q |
432 |
atatccttcttctgatcccatcagagagtgttttgatgattacagtaccgtggttgttgaggtaaaaggtgcattggctgaggatccggaattgataggg |
531 |
Q |
|
|
||||||||||||| | ||||||| ||| ||| | ||||||| | || ||||||| | | |||||| ||||||| ||| || ||||| | |||| |
|
|
T |
23914902 |
atatccttcttctcaacccatcaaagaatgtgctaatgattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggaccttatagac |
23914803 |
T |
 |
Q |
532 |
ttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatg |
631 |
Q |
|
|
|||| | ||| ||||||| |||||||| | | | ||| ||| |||||||||| |||||||| |||||||| ||| ||||||||||| ||||||||| |
|
|
T |
23914802 |
ttggatatcagatatgctagtgatgcacttggaaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatg |
23914703 |
T |
 |
Q |
632 |
agatggagttgtatgctgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaa |
709 |
Q |
|
|
||||| |||| ||| |||||||||| ||||||| | ||| ||||||| ||| || |||||||||| ||||||||| |
|
|
T |
23914702 |
agatgcagttatataatgatattgtattgatagccgcaggccatctataaataaattaatttatatttcatgaataaa |
23914625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 23915170 - 23915100
Alignment:
Q |
140 |
cttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgccatttcaccaacacca |
210 |
Q |
|
|
||||||| |||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
T |
23915170 |
cttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattcaccaacacca |
23915100 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 24436310 - 24436240
Alignment:
Q |
137 |
caccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgccatttcaccaaca |
207 |
Q |
|
|
|||||||||||||| |||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
T |
24436310 |
caccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca |
24436240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 5253011 - 5253066
Alignment:
Q |
160 |
ttgctcaccatttcaatgatgtttatttctcatgccatttcaccaacaccatcacc |
215 |
Q |
|
|
|||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |
|
|
T |
5253011 |
ttgctcaccatttcaatgatctctatttctcatgccatttcaccaacaccaacacc |
5253066 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 384
Target Start/End: Original strand, 23995237 - 23995388
Alignment:
Q |
233 |
caagccctaagttgtaccaaaacgtatgtaaagaacctggccaaaaagacttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcacttt |
332 |
Q |
|
|
||||||||||||||||||||| |||||||| ||| || |||| ||||| || ||||| || || ||||| | ||||| | ||||||||||| |||| |
|
|
T |
23995237 |
caagccctaagttgtaccaaagtgtatgtaaggaatctcgccacaaagattttgaacaacgctgcttgaaaacattagaagcctaccctcaaattacttc |
23995336 |
T |
 |
Q |
333 |
gatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaata |
384 |
Q |
|
|
|| |||||||||||| || |||| ||| | || | ||||||||||||||||| |
|
|
T |
23995337 |
gaccgaagattatcttacattttccagattatatctaaagattgtggcaata |
23995388 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 23989846 - 23989920
Alignment:
Q |
141 |
ttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgccatttcaccaacaccatcacc |
215 |
Q |
|
|
|||| |||||||||| || || |||||||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
T |
23989846 |
ttcatcatatttatccttgttactcaccatctcaatgaactttatttctcatgccatttcaccaacaccaacacc |
23989920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 623
Target Start/End: Complemental strand, 24435898 - 24435842
Alignment:
Q |
567 |
gtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacact |
623 |
Q |
|
|
|||||||| |||||||| |||||||||||||||||||| ||||||| || ||||||| |
|
|
T |
24435898 |
gtgcgaacatagcttagttaatgaaaagattgttaatacttcttccctttctacact |
24435842 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 23995165 - 23995226
Alignment:
Q |
137 |
caccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgccatt |
198 |
Q |
|
|
|||||||| |||||||||| || || |||||||||||| |||| ||| |||||||||||||| |
|
|
T |
23995165 |
caccttcatcatatttatctttgtttctcaccatttcagtgatttttttttctcatgccatt |
23995226 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 24436127 - 24436021
Alignment:
Q |
338 |
aagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaatcaccgaaaaatatcc |
437 |
Q |
|
|
||||||||||||| |||| || | |||||||| ||||||||||||||| || |||| |||| ||||||| ||||| |||||| | |||| ||||| |
|
|
T |
24436127 |
aagattatctaactttttcaagattatttttaaggattgtggcaatagagaatgcaacaaaagcccaacatcaagtcaaagaaatgaagaaaaagtatcc |
24436028 |
T |
 |
Q |
438 |
ttcttct |
444 |
Q |
|
|
||||||| |
|
|
T |
24436027 |
ttcttct |
24436021 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 232 - 694
Target Start/End: Complemental strand, 35074815 - 35074353
Alignment:
Q |
232 |
ccaagccctaagttgtaccaaaacgtatgtaaagaacctggccaaaaagacttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactt |
331 |
Q |
|
|
|||||||||||||||||| || |||| |||||| |||| ||||||||||| ||||| |||||||| ||||| |||||| ||||||||||||| |||| |
|
|
T |
35074815 |
ccaagccctaagttgtacgaacgtatatgcaaagaatctggtcaaaaagactttgaacaacgttgtctcaaacttatagaagcttaccctcaaattactt |
35074716 |
T |
 |
Q |
332 |
tgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaatcaccgaaaa |
431 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| | ||| || | | || |
|
|
T |
35074715 |
tgatcgaagattatctaactttttgcaggtcatttttaaagattgtggcaatagagaaggcagtaaaatcccaacaacaagttaaagagattatgaacaa |
35074616 |
T |
 |
Q |
432 |
atatccttcttctgatcccatcagagagtgttttgatgattacagtaccgtggttgttgaggtaaaaggtgcattggctgaggatccggaattgataggg |
531 |
Q |
|
|
||||||||||||| | ||||||| ||| ||| |||||||||| ||| |||||| | |||||| ||||||||||| ||||||||||||| ||||| | |
|
|
T |
35074615 |
atatccttcttctcaacccatcaaagaatgtggggatgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaatgataagc |
35074516 |
T |
 |
Q |
532 |
ttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatg |
631 |
Q |
|
|
|||||||||| |||||| | |||||| | |||||||| ||||||||||| ||| ||||||||||||| |||| ||||||||||| | |||||||||||| |
|
|
T |
35074515 |
atggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatacttcttccattgttgcactgaatcatg |
35074416 |
T |
 |
Q |
632 |
agatggagttgtatgctgatattgtagtgatagctggaggtcatctatgaatcaaaaaattta |
694 |
Q |
|
|
| ||| |||| || | |||||||||||||||| ||||| ||||||| ||| || ||||||| |
|
|
T |
35074415 |
acatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaattta |
35074353 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 232 - 679
Target Start/End: Complemental strand, 35079784 - 35079337
Alignment:
Q |
232 |
ccaagccctaagttgtaccaaaacgtatgtaaagaacctggccaaaaagacttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactt |
331 |
Q |
|
|
|||||||| ||||||||| ||| ||||||||||||||| | || ||||| |||||||| |||||||| ||||| |||||| |||||||| |||| || | |
|
|
T |
35079784 |
ccaagccccaagttgtacaaaagtgtatgtaaagaacctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattacct |
35079685 |
T |
 |
Q |
332 |
tgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaatcaccgaaaa |
431 |
Q |
|
|
||||| ||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||| ||||| |||||| |||| |
|
|
T |
35079684 |
tgatcaaagattatctaaccttttgcaggtcctttttaaagactgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaa |
35079585 |
T |
 |
Q |
432 |
atatccttcttctgatcccatcagagagtgttttgatgattacagtaccgtggttgttgaggtaaaaggtgcattggctgaggatccggaattgataggg |
531 |
Q |
|
|
||||||||||||| | || |||| ||| || ||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||| ||||| | |
|
|
T |
35079584 |
atatccttcttctcaacctatcaaagaatgcggtgatgattacaatacggtggttagcgaggtacaaggtgcattgcgcgaggatccggaaatgataagc |
35079485 |
T |
 |
Q |
532 |
ttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatg |
631 |
Q |
|
|
|||||||||||||||||| | |||||| | |||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||| || ||||||||| |
|
|
T |
35079484 |
ttggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtagcttggctaacgaaaagattgttaatacttcttccattgctgcattgaatcatg |
35079385 |
T |
 |
Q |
632 |
agatggagttgtatgctgatattgtagtgatagctggaggtcatctat |
679 |
Q |
|
|
||||| ||||||| | ||||||||||| ||||| ||||| ||||||| |
|
|
T |
35079384 |
agatgatgttgtatacagatattgtagtcatagccggaggccatctat |
35079337 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 35074886 - 35074813
Alignment:
Q |
137 |
caccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgccatttcaccaacacca |
210 |
Q |
|
|
||||||||||||| ||||| ||||| ||| ||||||||||| ||||||| ||||||| |||||||||||||| |
|
|
T |
35074886 |
caccttcaacatacttatccttttttatcattatttcaatgatctttatttgtcatgccctttcaccaacacca |
35074813 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 638
Target Start/End: Original strand, 13436196 - 13436259
Alignment:
Q |
575 |
gtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatgga |
638 |
Q |
|
|
||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| |
|
|
T |
13436196 |
gtagcttagttaatgaaaagatttttaatatttcttccatttctacaatgaatagtgagatgga |
13436259 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 13435788 - 13435858
Alignment:
Q |
137 |
caccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgccatttcaccaaca |
207 |
Q |
|
|
||||||| ||| ||||||| || ||||||||||| |||||||| ||||||||||| |||||||||| |||| |
|
|
T |
13435788 |
caccttccacaaatttatccttattgctcaccatatcaatgatctttatttctcacgccatttcacgaaca |
13435858 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 444
Target Start/End: Original strand, 13435966 - 13436071
Alignment:
Q |
339 |
agattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaatcaccgaaaaatatcct |
438 |
Q |
|
|
||||||||| ||||||| || | |||||||| ||||||||||||||| || |||| |||| |||||| ||||| |||||| || |||||||||| |
|
|
T |
13435966 |
agattatcttaccttttcaagattatttttaaggattgtggcaatagataatgcaacaaaagtccaacataaagtcaaagaaatgacgaaaaaatatccc |
13436065 |
T |
 |
Q |
439 |
tcttct |
444 |
Q |
|
|
|||||| |
|
|
T |
13436066 |
tcttct |
13436071 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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