View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_high_40 (Length: 317)
Name: NF0778_high_40
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 16211677 - 16211398
Alignment:
| Q |
30 |
gtctataggtacatctgcaatagtcgagaccaaagtgatggatacataacccaacacccgactttggatattggccggtacactttgcatcacaacaatc |
129 |
Q |
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| T |
16211677 |
gtctataggtacatctgcaatagtcgagaccaaagtgatggatacataacccaacacccgactttggatattggccggtacactttgcatcacaacaatc |
16211578 |
T |
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| Q |
130 |
actcctacaatccttagtgcagagtcccatcccaatatcgcatagagcaatatcatatggttcatgatcgtaagtacatgtgcataagttgtagaagtca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16211577 |
actcctacaatccttagtgcagagtcccatcccaatatcgcatagagcaatatcatatggttcatgatcgtaagtacatgtgcataagttgtagaagtca |
16211478 |
T |
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| Q |
230 |
caattcgtgcctataagtttagcaccacttccaacggctttacacactgctggacaactaagatttttagcagtataatc |
309 |
Q |
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| T |
16211477 |
caattcgtgcctataagtttagcaccacttccaacggctttacacactgctggacaactaagatttttagcagtacaatc |
16211398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 16220868 - 16220621
Alignment:
| Q |
30 |
gtctataggtacatctgcaatagtcgagaccaaagtgatggatacataacccaacacccgactttggatattggccggtacactttgcatcacaacaatc |
129 |
Q |
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| T |
16220868 |
gtctataggtacatctgcaatagtcgagaccaaagtgttggatacataacccaccacccgacttaggatattggcctgtacactttgcatcac------- |
16220776 |
T |
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| Q |
130 |
actcctacaatccttagtgcagagtcccatcccaatatcgcatagagcaatatcatatggttcatgatcgtaagtacatgtgcataagttgtagaagtca |
229 |
Q |
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| T |
16220775 |
--------------tagtgcagagtcccatcccaatatcgcatagatcaatatcatatggttgatgatcgtaagtacaggtgcataagttgtagaagtca |
16220690 |
T |
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| Q |
230 |
caattcgtgcctataagtttagcaccacttccaacggctttacacactgctggacaactaagattttta |
298 |
Q |
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| T |
16220689 |
caattcgtgcctataagtttagcaccacttccaacgactttacacactgctggacaactaagatgttta |
16220621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 298
Target Start/End: Complemental strand, 16215901 - 16215635
Alignment:
| Q |
32 |
ctataggtacatctgcaatagtcgagaccaaagtgatggatacataacccaacacccgactttggatattggccggtacactttgcatcacaacaatcac |
131 |
Q |
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| T |
16215901 |
ctataggtacatctgcaatagtggagaccaaagtctcgcacacataacccaacacccgaataaggatattggccagtacaccttgcttcacaacaatcat |
16215802 |
T |
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| Q |
132 |
tcctacaatccttagtgcagagtcccatcccaatatcgcatagagcaatatcatatggttcatgatcgtaagtacatgtgcataagttgtagaagtcaca |
231 |
Q |
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| T |
16215801 |
ccatacaatcctcagtgcagagtcccatcccaatatcgcatagatcaaaattatatggtagatgatcgtaagtacaagtgcataaattgtagaagtcaca |
16215702 |
T |
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| Q |
232 |
attcgtgcctataagtttagcaccacttccaacggctttacacactgctggacaactaagattttta |
298 |
Q |
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||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||| |
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| T |
16215701 |
attcgtgcctataagtttaacaccttttccaaaggctttacacactgctggacaactaagatgttta |
16215635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 276
Target Start/End: Complemental strand, 16207500 - 16207245
Alignment:
| Q |
30 |
gtctataggtacatctgcaatagtcgagaccaaagtgatggatacataacccaacacccgactttggatattggccggtacactttgcatcacaacaatc |
129 |
Q |
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||||||||||||| |||||||||||||||| ||| || | ||| ||||||||||| ||||| ||||||| || |||||| || |||||||||||| |
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| T |
16207500 |
gtctataggtacaagagcaatagtcgagaccatagtcttgcacacaaaacccaacacctgacttaggatatttgctagtacaccttttatcacaacaatc |
16207401 |
T |
|
| Q |
130 |
actcctacaatccttagtgcagagtcccatcccaatatcgcatagagcaatatcatatggttc---------atgatcgtaagtacatgtgcataagttg |
220 |
Q |
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| |||||||||| ||||||| ||||||||||||||| |||| || || || || || | ||| || |||| |||||||||||||||| |
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| T |
16207400 |
attcctacaatcactagtgcatagtcccatcccaatactgcattgattaactccaaattgtcctgttactggatgttcataagaacatgtgcataagttg |
16207301 |
T |
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| Q |
221 |
tagaagtcacaattcgtgcctataagtttagcaccacttccaacggctttacacac |
276 |
Q |
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||||||||||||||||||| |||| |||||||||| |||||| | ||| |||||| |
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| T |
16207300 |
tagaagtcacaattcgtgcttataggtttagcaccttttccaaagtcttgacacac |
16207245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 16226098 - 16226027
Alignment:
| Q |
198 |
cgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaacggctt |
269 |
Q |
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| T |
16226098 |
cgtaagtacatgtgcataagttgtagaagtcacaactcgatcctataggtttaacacctcttccaaaggctt |
16226027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 16181021 - 16180949
Alignment:
| Q |
197 |
tcgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaacggctt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||| ||||| |||| ||||||| ||||| |
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| T |
16181021 |
tcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggctt |
16180949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 16226227 - 16226133
Alignment:
| Q |
78 |
acccaacacccgactttggatattggccggtacactttgcatcacaacaatcactcctacaatccttagtgcagagtcccatcccaatatcgcat |
172 |
Q |
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|
|||||||||||||||| ||||||| | |||| |||||| |||||||||| |||||||||| | |||||| |||||||||||||| |||||| |
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| T |
16226227 |
acccaacacccgacttaggatatttgatttcacaccttgcataacaacaatcattcctacaatcatcagtgcatagtcccatcccaatttcgcat |
16226133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 16181148 - 16181055
Alignment:
| Q |
79 |
cccaacacccgactttggatattggccggtacactttgcatcacaacaatcactcctacaatccttagtgcagagtcccatcccaatatcgcat |
172 |
Q |
| |
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||||||||||||||| ||||||| | |||| |||||| |||||||||| |||||||||| | ||||| |||||||||||||| |||||| |
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| T |
16181148 |
cccaacacccgacttaggatatttgatttcacaccttgcataacaacaatcattcctacaatcatcggtgcatagtcccatcccaatttcgcat |
16181055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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