View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_high_52 (Length: 267)
Name: NF0778_high_52
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 50275657 - 50275919
Alignment:
| Q |
1 |
ttactagtggtagtttgtttttagcctctataa----agtcttgatgtaaccgcttattcattctaaatatcatttctattttactatctaaacttttct |
96 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275657 |
ttactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttct |
50275756 |
T |
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| Q |
97 |
cttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275757 |
cttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatct |
50275856 |
T |
|
| Q |
197 |
ttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgct |
259 |
Q |
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| T |
50275857 |
ttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgct |
50275919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 50279681 - 50279943
Alignment:
| Q |
1 |
ttactagtggtagtttgtttttagcctctataa----agtcttgatgtaaccgcttattcattctaaatatcatttctattttactatctaaacttttct |
96 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279681 |
ttactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttct |
50279780 |
T |
|
| Q |
97 |
cttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279781 |
cttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatct |
50279880 |
T |
|
| Q |
197 |
ttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279881 |
ttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgct |
50279943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 14462668 - 14462564
Alignment:
| Q |
155 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462668 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
14462569 |
T |
|
| Q |
255 |
atgct |
259 |
Q |
| |
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||||| |
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|
| T |
14462568 |
atgct |
14462564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 22610283 - 22610169
Alignment:
| Q |
145 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagc |
244 |
Q |
| |
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|||||||||||| ||| |||||||| ||| ||||| |||| || ||| |||||||| | |||||||||||||||||| | || |||||||||||||||| |
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| T |
22610283 |
tcaccttgagaatttcagatgaacgaaatgcaccatgccaaataaaaaatctttctactggtgtcttccacaacccatagagcatgtgaaatacatcagt |
22610184 |
T |
|
| Q |
245 |
ctttgcacctatgct |
259 |
Q |
| |
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|||||| |||||||| |
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| T |
22610183 |
ctttgcccctatgct |
22610169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 14931491 - 14931420
Alignment:
| Q |
145 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccaca |
216 |
Q |
| |
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|||||||||||||||| || || || || ||||||||||| | |||||| ||||| |||||||| ||||||| |
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| T |
14931491 |
tcaccttgagaagttcagacgaccgaaaaccaccaagccataagaaacacctttcagcaggtgttttccaca |
14931420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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