View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_high_81 (Length: 202)

Name: NF0778_high_81
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_high_81
NF0778_high_81
[»] chr8 (2 HSPs)
chr8 (1-67)||(31382481-31382547)
chr8 (5-67)||(5196836-5196898)
[»] chr1 (3 HSPs)
chr1 (5-67)||(18238946-18239008)
chr1 (5-67)||(25986108-25986170)
chr1 (5-67)||(34575654-34575716)
[»] chr3 (2 HSPs)
chr3 (1-61)||(42711288-42711348)
chr3 (5-67)||(12716450-12716512)
[»] chr2 (3 HSPs)
chr2 (5-61)||(31074758-31074814)
chr2 (5-67)||(35740291-35740353)
chr2 (5-56)||(9676710-9676761)
[»] chr6 (1 HSPs)
chr6 (5-67)||(10901161-10901223)
[»] chr4 (2 HSPs)
chr4 (5-67)||(35421500-35421562)
chr4 (5-67)||(53667991-53668053)
[»] chr7 (1 HSPs)
chr7 (8-67)||(5640758-5640817)


Alignment Details
Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 31382481 - 31382547
Alignment:
Q  1 gctcttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31382481 gctcttgctccactagaagatttattattggtattaatcgaagtgaaagtctcattcctattttctt 31382547  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 5196898 - 5196836
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||    
T  5196898 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcatattttctt 5196836  T

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Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 18239008 - 18238946
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  18239008 ttgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctattttctt 18238946  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 25986108 - 25986170
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  25986108 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctattttctt 25986170  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 34575716 - 34575654
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  34575716 ttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctattttctt 34575654  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42711348 - 42711288
Alignment:
Q  1 gctcttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42711348 gctcttgctccactagaagattgattattggtaataatcgaagtggaagtctcattcctat 42711288  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 12716450 - 12716512
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  12716450 ttgctcaattagaagattgattattgatattaatcgaagtggaagtctcattcctattttctt 12716512  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 31074758 - 31074814
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31074758 ttgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctat 31074814  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 35740353 - 35740291
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  35740353 ttgctccacaagaagattgattattggtattaatcaaagtggaagtctcattcctattttctt 35740291  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 9676761 - 9676710
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcatt 56  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  9676761 ttgctccactagaagattgattattgatattaatccaagtggaagtctcatt 9676710  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 10901161 - 10901223
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  10901161 ttgctccactagaagattgattattagtattaatcgaagtggaagtctcattcctattttctt 10901223  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 35421562 - 35421500
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  35421562 ttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctattttctt 35421500  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 53667991 - 53668053
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  53667991 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctattttctt 53668053  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 5640817 - 5640758
Alignment:
Q  8 ctccactagaagatttattattggtattaatcgaagtggaagtctcattcctatattctt 67  Q
    |||||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  5640817 ctccactaaaagattggttattggtattaatcgaagtggaagtctcattcctattttctt 5640758  T

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