View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_high_82 (Length: 202)

Name: NF0778_high_82
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_high_82
NF0778_high_82
[»] chr8 (2 HSPs)
chr8 (1-61)||(31382481-31382541)
chr8 (5-57)||(5196846-5196898)
[»] chr3 (2 HSPs)
chr3 (1-61)||(42711288-42711348)
chr3 (5-61)||(12716450-12716506)
[»] chr2 (3 HSPs)
chr2 (5-61)||(31074758-31074814)
chr2 (5-61)||(35740297-35740353)
chr2 (5-56)||(9676710-9676761)
[»] chr1 (3 HSPs)
chr1 (5-61)||(18238952-18239008)
chr1 (5-61)||(25986108-25986164)
chr1 (5-61)||(34575660-34575716)
[»] chr6 (1 HSPs)
chr6 (5-61)||(10901161-10901217)
[»] chr4 (2 HSPs)
chr4 (5-61)||(35421506-35421562)
chr4 (5-61)||(53667991-53668047)
[»] chr7 (1 HSPs)
chr7 (8-61)||(5640764-5640817)


Alignment Details
Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31382481 - 31382541
Alignment:
Q  1 gctcttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31382481 gctcttgctccactagaagatttattattggtattaatcgaagtgaaagtctcattcctat 31382541  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 5196898 - 5196846
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattc 57  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  5196898 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattc 5196846  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42711348 - 42711288
Alignment:
Q  1 gctcttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42711348 gctcttgctccactagaagattgattattggtaataatcgaagtggaagtctcattcctat 42711288  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 12716450 - 12716506
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  12716450 ttgctcaattagaagattgattattgatattaatcgaagtggaagtctcattcctat 12716506  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 31074758 - 31074814
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31074758 ttgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctat 31074814  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 35740353 - 35740297
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||    
T  35740353 ttgctccacaagaagattgattattggtattaatcaaagtggaagtctcattcctat 35740297  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 9676761 - 9676710
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcatt 56  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  9676761 ttgctccactagaagattgattattgatattaatccaagtggaagtctcatt 9676710  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 18239008 - 18238952
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18239008 ttgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctat 18238952  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 25986108 - 25986164
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  25986108 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctat 25986164  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 34575716 - 34575660
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  34575716 ttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctat 34575660  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 10901161 - 10901217
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  10901161 ttgctccactagaagattgattattagtattaatcgaagtggaagtctcattcctat 10901217  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 35421562 - 35421506
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  35421562 ttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctat 35421506  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 53667991 - 53668047
Alignment:
Q  5 ttgctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  53667991 ttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctat 53668047  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 5640817 - 5640764
Alignment:
Q  8 ctccactagaagatttattattggtattaatcgaagtggaagtctcattcctat 61  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  5640817 ctccactaaaagattggttattggtattaatcgaagtggaagtctcattcctat 5640764  T

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