View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0778_low_1 (Length: 824)
Name: NF0778_low_1
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_1 |
 | |
|
| [»] scaffold0088 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 707
Target Start/End: Original strand, 8482083 - 8482816
Alignment:
| Q |
8 |
ccaacaatatcaccttgaagattttggaggatgttgagaatatctcgaaatgaaaggcctcctggttcatggtgagacactcctggagcaatagatgggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8482083 |
ccaacaatatcaccttgaagattttgaaggatattgagaatatcacgaaataaaagtcctcccggttcatggtgagacactcctggagcaattgatgggt |
8482182 |
T |
|
| Q |
108 |
caagagaatccacatctattgaaacatatactcccttaacaccttcacctagtttctgtacacaaaaagaaatttccaaggtttcaaaattaaagaaaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8482183 |
caagagaatccacatctattgaaacatatactcccttaacaccttcacctagtttctgtacacaaa--gaaatttccaaggtttcaaaattaaagaaaca |
8482280 |
T |
|
| Q |
208 |
ctaaatttcatatacagtctttttaacacaaaatttgacatcagacacaaaatttcagataaatcttacatcatatacataaaccagttttcaccatt-- |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
8482281 |
ctaaatttcatatacagtctttttaacacaaaatttgacatcagacacaaaatttcagataaatcttacatcatgtacataaactagttttcaccattgg |
8482380 |
T |
|
| Q |
306 |
-------------------aaattaaatgaaatatgacatgactttttgatctaatgatggattagacgcttgtgcatagtgcaagaccatttttcttgt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8482381 |
ttcaataaatttcaccattaaattaaatgaaatatgacatgactttttgatctaatggtggatcagacgcttgtgcatagtgcaagaccatttttcttgt |
8482480 |
T |
|
| Q |
387 |
ccatattagacaaagactaataaataa-tgatgatactaatcgctagaaaaagttgaattattataaattagaggcgaatgtttttatatctaattatga |
485 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8482481 |
ccatattagacaaagactaataaataaatgatgatactaatcgctagaaaaagttgaattattagaaattagaggcgaatgtttttatatttaattatga |
8482580 |
T |
|
| Q |
486 |
tactaagtgttaaagatctcgtgattagagacgagttttcctttttcatctataatttacacatcttgtgtttgg-tatcacgctagatatgtcagaatc |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
8482581 |
tactaagtgttaaagatctcgtgattagagacgagttttcctttttcatctctaatttacacatcttgtttttggttatcacgctagatatgtcagaatc |
8482680 |
T |
|
| Q |
585 |
atgg-------------tttttcaaaaactatgatttgtgcttctgcaaaatcacagtagatcaacctgattctaacatatctatcgcgatatgccaaac |
671 |
Q |
| |
|
|||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8482681 |
atggtggccgatcatgattttccaaaaactacgatttatgcttctgcaaaatcacagtagatcaacctgattctaacatatctatcgcgatatgccaaac |
8482780 |
T |
|
| Q |
672 |
atacaaacagttttttcatagtaaaaaagtgacatt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8482781 |
atacaaacagttttttcatagtaaaaaagtgacatt |
8482816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 8471723 - 8471877
Alignment:
| Q |
11 |
acaatatcaccttgaagattttggaggatgttgagaatatctcgaaatgaaaggcctcctggttcatggtgagacactcctggagcaatagatgggtcaa |
110 |
Q |
| |
|
|||| ||| ||||||||||| || |||||||| |||| ||| || |||||||| ||||||||||| |||||||||||| ||||||| || || |||| |
|
|
| T |
8471723 |
acaacatcgccttgaagattgtgtaggatgttaagaacatcgcggaatgaaagacctcctggttctatgtgagacactccaggagcaaaagcaggatcaa |
8471822 |
T |
|
| Q |
111 |
gagaatccacatctattgaaacatatactcccttaacaccttcacctagtttctg |
165 |
Q |
| |
|
|| |||||||||||||||| | |||||| || || |||||||| ||||||||||| |
|
|
| T |
8471823 |
gacaatccacatctattgagatatatacacctttcacaccttcccctagtttctg |
8471877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 298 - 406
Target Start/End: Original strand, 6863097 - 6863206
Alignment:
| Q |
298 |
tcaccattaaattaaatgaaatatgacatgactttttg-atctaatgatggattagacgcttgtgcatagtgcaagaccatttttcttgtccatattaga |
396 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||| |||| || | ||||||||| ||||||||||||||| ||||| ||| ||||| |
|
|
| T |
6863097 |
tcaccattaaattaaatgaaatatgatgtgactttttttatctaatggtggaaaaggcacttgtgcatggtgcaagaccattttgcttgtgcatgttaga |
6863196 |
T |
|
| Q |
397 |
caaagactaa |
406 |
Q |
| |
|
||||| |||| |
|
|
| T |
6863197 |
caaagcctaa |
6863206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 41957573 - 41957468
Alignment:
| Q |
296 |
tttcaccattaaattaaatgaaatatgacatgactttttgatctaatgatgg--attagacgcttgtgcatagtgcaagaccatttttcttgtccatatt |
393 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||||| ||| ||||| || ||||||| |||||||| ||||||||||||||| ||||| ||| || |
|
|
| T |
41957573 |
tttcacgattaaattaaataaaatatgatatgactttttaatccaatgacggaaattagacatttgtgcatggtgcaagaccattttacttgtgcatgtt |
41957474 |
T |
|
| Q |
394 |
agacaa |
399 |
Q |
| |
|
|||||| |
|
|
| T |
41957473 |
agacaa |
41957468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 298 - 401
Target Start/End: Complemental strand, 49596732 - 49596629
Alignment:
| Q |
298 |
tcaccattaaattaaatgaaatatgacatgactttttgatctaatgatggattagacgcttgtgcatagtgcaagaccatttttcttgtccatattagac |
397 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||| ||||||||||||| ||| | ||||||| || ||||| ||||| ||||||||| |||||| |
|
|
| T |
49596732 |
tcactattaaattaaacgaaatatgatgtgactttttaatctaatgatggaaatgacacgtgtgcatgatgtaagactattttgcttgtccatgttagac |
49596633 |
T |
|
| Q |
398 |
aaag |
401 |
Q |
| |
|
|||| |
|
|
| T |
49596632 |
aaag |
49596629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 35052531 - 35052626
Alignment:
| Q |
305 |
taaattaaatgaaatatgacatgactttttgatctaatgatggattagacgcttgtgcatagtgcaagaccatttttcttgtccatattagacaaa |
400 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||| |||| |||| |||| ||||||||| ||||| | |||||| ||||| ||| ||||||||| |
|
|
| T |
35052531 |
taaaataaattaaatatgatgtgactttttgatccaatggtggaaaagacacttgtgcatgatgcaatatcattttgcttgtgcatgttagacaaa |
35052626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 39742582 - 39742624
Alignment:
| Q |
299 |
caccattaaattaaatgaaatatgacatgactttttgatctaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39742582 |
caccattaaattaaatgaaatatgacatgacttattgatctaa |
39742624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 49401 - 49352
Alignment:
| Q |
107 |
tcaagagaatccacatctattgaaacatatactcccttaacaccttcacc |
156 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
49401 |
tcaagacaatccacatctattgatacatatactcctttaacaccttcacc |
49352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 42195968 - 42195928
Alignment:
| Q |
303 |
attaaattaaatgaaatatgacatgactttttgatctaatg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
42195968 |
attaaattaaatgaaatatgacatgacttattgatttaatg |
42195928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 6856977 - 6857071
Alignment:
| Q |
306 |
aaattaaatgaaatatgacatgactttttgatctaatgatggattagacgcttgtgcatagtgcaagaccatttttcttgtccatattagacaaa |
400 |
Q |
| |
|
|||||||||||||| ||| | ||||||| |||||||| |||| ||| ||||||||| ||||||| | ||||| ||||| ||| ||||||||| |
|
|
| T |
6856977 |
aaattaaatgaaatttgatgttacttttttatctaatggtggaaaagaaacttgtgcatggtgcaaggctattttgcttgtacatgttagacaaa |
6857071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 299 - 401
Target Start/End: Complemental strand, 33155629 - 33155527
Alignment:
| Q |
299 |
caccattaaattaaatgaaatatgacatgactttttgatctaatgatggattagacgcttgtgcatagtgcaagaccatttttcttgtccatattagaca |
398 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||| ||| || | || | ||||||||| ||||| ||||||||| ||||| ||| ||| ||| |
|
|
| T |
33155629 |
caccattaaattaaatgagaaatgatttgactttttgatccgatggtgaaaaagtcacttgtgcatggtgcaggaccattttgcttgtgcatgttaaaca |
33155530 |
T |
|
| Q |
399 |
aag |
401 |
Q |
| |
|
||| |
|
|
| T |
33155529 |
aag |
33155527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1128 times since January 2019
Visitors: 5826