View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_100 (Length: 266)
Name: NF0778_low_100
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 42735035 - 42734839
Alignment:
| Q |
44 |
atatagatatagagtgtaccttgaatattttcttgttaccaagtataacataacttgtgaagtctctatcaattgtgctagcagcaactgtgagaatcca |
143 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
42735035 |
atatagatatagagtgtaccttgagtattttcttgttaccaagtacaacataacttgtgaagtctctatcaattgtgcttgcagcaactgtgaggatcca |
42734936 |
T |
|
| Q |
144 |
cggttccatgtttgctacagtgttagaagaaggtcctgaattacctccggaagccacaacaattatgttgttggcaactgcatggaaagaccctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42734935 |
cggttccatgtttgctacagtgttagaagaaggtcctgaattacctccagaagccacaacaattatgttgttggcaactgcatggaaagaccctatg |
42734839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 42743491 - 42743671
Alignment:
| Q |
60 |
taccttgaatattttcttgttaccaagtataacataacttgtgaagtctctatcaattgtgctagcagcaactgtgagaatccacggttccatgtttgct |
159 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||| |||| ||||||| ||||||| |
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| T |
42743491 |
taccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggtttgct |
42743590 |
T |
|
| Q |
160 |
acagtgttagaagaaggtcctgaattacctccggaagccacaacaattatgttgttggcaactgcatggaaagaccctatg |
240 |
Q |
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| T |
42743591 |
acagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaaagaccctatg |
42743671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 42752850 - 42753030
Alignment:
| Q |
60 |
taccttgaatattttcttgttaccaagtataacataacttgtgaagtctctatcaattgtgctagcagcaactgtgagaatccacggttccatgtttgct |
159 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||| |||| ||||||| ||||||| |
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| T |
42752850 |
taccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggtttgct |
42752949 |
T |
|
| Q |
160 |
acagtgttagaagaaggtcctgaattacctccggaagccacaacaattatgttgttggcaactgcatggaaagaccctatg |
240 |
Q |
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|||||||||| ||||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42752950 |
acagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaaagaccctatg |
42753030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 42762472 - 42762652
Alignment:
| Q |
60 |
taccttgaatattttcttgttaccaagtataacataacttgtgaagtctctatcaattgtgctagcagcaactgtgagaatccacggttccatgtttgct |
159 |
Q |
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|
|||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||| ||| | | |
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| T |
42762472 |
taccttgagtatttttttgttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttccaagttggat |
42762571 |
T |
|
| Q |
160 |
acagtgttagaagaaggtcctgaattacctccggaagccacaacaattatgttgttggcaactgcatggaaagaccctatg |
240 |
Q |
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| T |
42762572 |
acagtactaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatg |
42762652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 42716866 - 42717046
Alignment:
| Q |
60 |
taccttgaatattttcttgttaccaagtataacataacttgtgaagtctctatcaattgtgctagcagcaactgtgagaatccacggttccatgtttgct |
159 |
Q |
| |
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|||||||| | |||| |||| |||||| ||||| |||| ||||| |||||||||||||| || ||||||||||| | | ||| ||||||| ||| | | |
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| T |
42716866 |
taccttgagtgttttgttgtcaccaagggtaacaaaactagtgaactctctatcaattgtacttgcagcaactgtaaacacccatggttccaagttggat |
42716965 |
T |
|
| Q |
160 |
acagtgttagaagaaggtcctgaattacctccggaagccacaacaattatgttgttggcaactgcatggaaagaccctatg |
240 |
Q |
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||||| ||| || |||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42716966 |
acagtactaggagcaggtcctgaatttcctccagcagccacaacaattatgttattggcaactgcatggaaagaccctatg |
42717046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 42769349 - 42769425
Alignment:
| Q |
60 |
taccttgaatattttcttgttaccaagtataacataacttgtgaagtctctatcaattgtgctagcagcaactgtga |
136 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| ||||| |||||||| |||| || ||||||||||||| |
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| T |
42769349 |
taccttgagtattttcttgttaccaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtga |
42769425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 23040983 - 23040803
Alignment:
| Q |
60 |
taccttgaatattttcttgttaccaagtataacataacttgtgaagtctctatcaattgtgctagcagcaactgtgagaatccacggttccatgtttgct |
159 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||||||| |||| |||||||||||| ||||||||||| || |||| ||||||| ||| | | |
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| T |
23040983 |
taccttgagtattttcttgttaccaagaataacatagcttgtgaaatctcgatcaattgtgcttgcagcaactgtaagtgtccaaggttccaagttggat |
23040884 |
T |
|
| Q |
160 |
acagtgttagaagaaggtcctgaattacctccggaagccacaacaattatgttgttggcaactgcatggaaagaccctatg |
240 |
Q |
| |
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||||| ||| | |||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23040883 |
acagtactaggatcaggtcctgaatttcctccaccagacacaacaatgatgttgttggcaactgcatggaaagaccctatg |
23040803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 42314170 - 42314123
Alignment:
| Q |
89 |
taacataacttgtgaagtctctatcaattgtgctagcagcaactgtga |
136 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
42314170 |
taacataactggcgaagtctctatcaattgtgctagcagcaaccgtga |
42314123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 37108171 - 37108231
Alignment:
| Q |
76 |
ttgttaccaagtataacataacttgtgaagtctctatcaattgtgctagcagcaactgtga |
136 |
Q |
| |
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||||||||||| | ||||||||| | ||| |||||||| |||||||| ||| ||||||||| |
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|
| T |
37108171 |
ttgttaccaagaacaacataactagggaactctctatccattgtgctggcaccaactgtga |
37108231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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