View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_101 (Length: 266)

Name: NF0778_low_101
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_101
NF0778_low_101
[»] chr4 (6 HSPs)
chr4 (1-120)||(39732734-39732853)
chr4 (1-120)||(5937898-5938017)
chr4 (1-120)||(50523926-50524045)
chr4 (128-203)||(4949694-4949769)
chr4 (128-231)||(4929721-4929818)
chr4 (198-233)||(4949482-4949517)
[»] chr5 (3 HSPs)
chr5 (1-120)||(19375461-19375580)
chr5 (1-111)||(10900065-10900175)
chr5 (1-120)||(40979344-40979462)
[»] chr2 (3 HSPs)
chr2 (1-120)||(44002571-44002690)
chr2 (1-80)||(37551521-37551601)
chr2 (1-73)||(19860224-19860296)
[»] chr1 (5 HSPs)
chr1 (4-120)||(41512068-41512184)
chr1 (1-117)||(42137749-42137865)
chr1 (3-120)||(24075446-24075563)
chr1 (5-78)||(3850924-3850997)
chr1 (1-54)||(1762207-1762261)
[»] chr7 (5 HSPs)
chr7 (3-116)||(19544467-19544580)
chr7 (1-120)||(47158281-47158400)
chr7 (1-117)||(47085744-47085860)
chr7 (1-116)||(298715-298830)
chr7 (1-73)||(40233405-40233476)
[»] scaffold0184 (1 HSPs)
scaffold0184 (4-120)||(9752-9868)
[»] chr3 (4 HSPs)
chr3 (1-117)||(44610879-44610995)
chr3 (1-120)||(30809733-30809852)
chr3 (3-120)||(50392877-50392994)
chr3 (1-73)||(45489166-45489238)
[»] chr6 (1 HSPs)
chr6 (1-74)||(20838550-20838623)
[»] chr8 (2 HSPs)
chr8 (1-81)||(2025476-2025556)
chr8 (1-115)||(7636372-7636485)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 39732853 - 39732734
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||| || || |||| |||| |||    
T  39732853 tgcttttggagatgagaattgattttgagaagctgaaccaaacatgttggaattgcaaattttcacctttgaagctaccagaagtgcttttaagagttgt 39732754  T
Q  101 agaagctgaaccaaacacac 120  Q
    ||||||||||||||||||||    
T  39732753 agaagctgaaccaaacacac 39732734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5937898 - 5938017
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  | ||||||||| |||||||||||| |||||||| || || |||| |||| |||    
T  5937898 tgcttttggagatgagaattgattttgagaagctgaaccaaacatgctggaattgcaagttttcacttttgtagctaccagaagtgcttttaagaggtgt 5937997  T
Q  101 agaagctgaaccaaacacac 120  Q
    ||||||||||||||||||||    
T  5937998 agaagctgaaccaaacacac 5938017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 50523926 - 50524045
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||  |||||||| | |||||||||||||||| || ||||| ||||  ||| |||    
T  50523926 tgcttttggagatgagaattgattttgagaagttgaaccaaacatattgaaattgcaagtgttcacttttgaagctatcagaaatgcttttaggaggtgt 50524025  T
Q  101 agaagctgaaccaaacacac 120  Q
    ||||||||||||||||||||    
T  50524026 agaagctgaaccaaacacac 50524045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 4949769 - 4949694
Alignment:
Q  128 ttctaggaatttagtgaacagattgttgtttagtttcaaactgagtacaagtacaagagtagtggtatgtttcaac 203  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4949769 ttctaggaatttagtgaccagtttgttgtttagtttcaaactgagtacaagtacaagagtagtggtatgtttcaac 4949694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 4929818 - 4929721
Alignment:
Q  128 ttctaggaatttagtgaacagattgttgtttagtttcaaactgagtacaagtacaagagtagtggtatgtttcaaccattatttaaagcaatatatgtgt 227  Q
    ||||||| ||||||||||||| ||||| |||| ||||||||||||||||||      ||| |||| |||||| ||||||||| |||||||||||| ||||    
T  4929818 ttctagggatttagtgaacagtttgttctttaatttcaaactgagtacaag------agttgtggcatgtttgaaccattatataaagcaatataggtgt 4929725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 4949517 - 4949482
Alignment:
Q  198 ttcaaccattatttaaagcaatatatgtgttggtac 233  Q
    |||||| |||||||||||||||||||||||||||||    
T  4949517 ttcaacaattatttaaagcaatatatgtgttggtac 4949482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 19375461 - 19375580
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    |||||||||||||||||||||||||||||||||| ||| |||||  || ||||||||| ||||||||||||||||||||| || ||||||| |||| |||    
T  19375461 tgcttttggagatgagaattgattttgagaagcttaaccaaacacgttggaattgcaagttttcacttttgaagctaccagaagtgtttttaagaggtgt 19375560  T
Q  101 agaagctgaaccaaacacac 120  Q
    ||||||||||||||||||||    
T  19375561 agaagctgaaccaaacacac 19375580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10900175 - 10900065
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||| || ||||||| |||| |||    
T  10900175 tgcttttggagatgagaattgattttgagaagctgaaccaaacatgttggaattgcaaattttcacttttgaagttaccagaagtgtttttaagaggtgt 10900076  T
Q  101 agaagctgaac 111  Q
    | |||||||||    
T  10900075 aaaagctgaac 10900065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 40979462 - 40979344
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| || ||||||||| |||||||||||||||||| || || || |||| |||| |||    
T  40979462 tgcttttggagatgagaattgattttgataagctgaaccaaacatgttggaattgcaagttttcacttttgaagcta-cataagtgcttttaagaggtgt 40979364  T
Q  101 agaagctgaaccaaacacac 120  Q
    ||||||||||| ||||||||    
T  40979363 agaagctgaactaaacacac 40979344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 44002690 - 44002571
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||| || || |||| |||| |||    
T  44002690 tgcttttagagatgagaattgattttgagaagctgaaccaaacatgttggaattgcaagttttcacttttgaagctaccagaagtgcttttaagagttgt 44002591  T
Q  101 agaagctgaaccaaacacac 120  Q
    ||||||||||||||||||||    
T  44002590 agaagctgaaccaaacacac 44002571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 37551601 - 37551521
Alignment:
Q  1 tgcttttggagatgagaattgattttgag-aagctgaacaaaacatattagaattgcaaattttcacttttgaagctacca 80  Q
    |||||||||| |||||||||||||||||| ||| | ||| ||||||||| ||||| | | |||||||||||||||||||||    
T  37551601 tgcttttggatatgagaattgattttgagaaagttaaaccaaacatattggaattactagttttcacttttgaagctacca 37551521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19860296 - 19860224
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaa 73  Q
    ||||||| |||||||||||||||||||||||| | ||| |||||| || |||| |  | ||||||||||||||    
T  19860296 tgcttttagagatgagaattgattttgagaagttaaaccaaacatgttggaatcgttagttttcacttttgaa 19860224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 41512184 - 41512068
Alignment:
Q  4 ttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgtaga 103  Q
    ||||||||||||||||||||||||||||||||||| ||| || || ||||||||| ||||||||||||||||||| |||| ||||||| |||  ||||||    
T  41512184 ttttggagatgagaattgattttgagaagctgaaccaaagatgttggaattgcaagttttcacttttgaagctacgaaaagtgtttttaagatgtgtaga 41512085  T
Q  104 agctgaaccaaacacac 120  Q
    |||||||||||||||||    
T  41512084 agctgaaccaaacacac 41512068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42137749 - 42137865
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    ||||||||||||||||||||||||||||||| || ||| ||| || || ||||||| |||||||||||||||||||| | ||| || |||| |  | |||    
T  42137749 tgcttttggagatgagaattgattttgagaaactaaaccaaatatgttggaattgctaattttcacttttgaagctatcgaaagtgcttttaaagggtgt 42137848  T
Q  101 agaagctgaaccaaaca 117  Q
    |||||||||||||||||    
T  42137849 agaagctgaaccaaaca 42137865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 24075563 - 24075446
Alignment:
Q  3 cttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgtag 102  Q
    |||||| |||||||||| |||||| | ||| ||||| |||||| ||  |||||||| ||||||||||| || |||||| ||||  |||||| ||||||||    
T  24075563 cttttgaagatgagaatcgattttaaaaagttgaaccaaacatgttgaaattgcaagttttcacttttaaaactaccagaaatacttttgaaagatgtag 24075464  T
Q  103 aagctgaaccaaacacac 120  Q
    ||||||||||||||||||    
T  24075463 aagctgaaccaaacacac 24075446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 3850924 - 3850997
Alignment:
Q  5 tttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctac 78  Q
    |||||||||||||||||||||||||||||||||| |||||  ||  |||||||| |||| ||||||||||||||    
T  3850924 tttggagatgagaattgattttgagaagctgaaccaaacaggttgaaattgcaagtttttacttttgaagctac 3850997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1762261 - 1762207
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctg-aacaaaacatattagaatt 54  Q
    ||||||||||||| | ||||||||||||||||||| ||| ||| |||||||||||    
T  1762261 tgcttttggagattaaaattgattttgagaagctgaaaccaaatatattagaatt 1762207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 19544580 - 19544467
Alignment:
Q  3 cttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgtag 102  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||||||| | ||||||||||||||||||||| || || ||||||  |||||||    
T  19544580 cttttggagatgagaattgattttgagaagctgaaccaaacatgttggaattgctagttttcacttttgaagctaccagaattgcttttgaaggatgtag 19544481  T
Q  103 aagctgaaccaaac 116  Q
    |||||||| |||||    
T  19544480 aagctgaaacaaac 19544467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 47158281 - 47158400
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    |||||||||||||||||||||||||||||||| | ||| |||| | || ||||||| | ||||||||||||| ||||||||||||| |||| |  | |||    
T  47158281 tgcttttggagatgagaattgattttgagaagttaaaccaaacctgttggaattgctagttttcacttttgatgctaccaaaaatgcttttaaatggtgt 47158380  T
Q  101 agaagctgaaccaaacacac 120  Q
    ||||||||||||||||||||    
T  47158381 agaagctgaaccaaacacac 47158400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 47085744 - 47085860
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    ||||||| ||||| |||||||||||||||||||| ||  |||||| ||  |||||| |||||||||||||||||||||||||| || ||||||  |||||    
T  47085744 tgcttttagagattagaattgattttgagaagctaaatcaaacatgttgaaattgctaattttcacttttgaagctaccaaaattgcttttgaaggatgt 47085843  T
Q  101 agaagctgaaccaaaca 117  Q
    |||||||||| ||||||    
T  47085844 agaagctgaaacaaaca 47085860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 298715 - 298830
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    ||||||| || ||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||| ||||||||| || || ||||||  |  ||    
T  298715 tgcttttagaaatgagaattgattttgagaagctgaaccaaacatattgaaattgctaattttcacttttaaagctaccagaattgcttttgaaggccgt 298814  T
Q  101 agaagctgaaccaaac 116  Q
    ||||||||||||||||    
T  298815 agaagctgaaccaaac 298830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 40233476 - 40233405
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaa 73  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||| |||||| |||||  | ||||||||||||||    
T  40233476 tgcttttgaagatgagaattaattttgagaagttgaac-aaatatattaaaattggtagttttcacttttgaa 40233405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 9752 - 9868
Alignment:
Q  4 ttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgtaga 103  Q
    ||||| ||||||||||||||||||||||||||||| |||||| || |||||| || |||||||||||||| |||||| ||||| |||||| || | ||||    
T  9752 ttttgaagatgagaattgattttgagaagctgaaccaaacatgttggaattgtaagttttcacttttgaaactaccagaaatgcttttgaaaggtataga 9851  T
Q  104 agctgaaccaaacacac 120  Q
    |||||||||||||||||    
T  9852 agctgaaccaaacacac 9868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 44610879 - 44610995
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| || ||||||| | |||||||||||||| |||||| || || ||||||  |||||    
T  44610879 tgcttttggagatgagaattgattttgtgaagctgaaccaaacatgttggaattgctagttttcacttttgaaactaccagaattgcttttgaatgatgt 44610978  T
Q  101 agaagctgaaccaaaca 117  Q
    |||||||||||||||||    
T  44610979 agaagctgaaccaaaca 44610995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 30809852 - 30809733
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| || |||||| || |||||||||||||||||| || || || ||||||||| |||    
T  30809852 tgcttttggagatgagagttgattttgagaagctgaaccaaacatgttggaattggaagttttcacttttgaagctatcagaagtgcttttgagaggtgt 30809753  T
Q  101 agaagctgaaccaaacacac 120  Q
    | |||||||||||| |||||    
T  30809752 aaaagctgaaccaagcacac 30809733  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 50392877 - 50392994
Alignment:
Q  3 cttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgtag 102  Q
    |||||||||||||||||||||||||||||| ||||| |||||| |  ||||||||| ||||||||||| ||||||||| || || |||| |||| | |||    
T  50392877 cttttggagatgagaattgattttgagaagttgaaccaaacatgtcggaattgcaagttttcacttttaaagctaccagaagtgcttttaagaggtatag 50392976  T
Q  103 aagctgaaccaaacacac 120  Q
    ||| |||| |||||||||    
T  50392977 aagttgaatcaaacacac 50392994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45489166 - 45489238
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaa 73  Q
    ||||||| |||||||||||||||||||||||| | ||| |||||| || |||| |  | ||||||||||||||    
T  45489166 tgcttttagagatgagaattgattttgagaagttaaaccaaacatgttggaatcgttagttttcacttttgaa 45489238  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20838550 - 20838623
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaag 74  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || ||||||| | |||||||||||||||    
T  20838550 tgcttttggagatgagaattgattttgagaagctgaaccaaacatgttggaattgctagttttcacttttgaag 20838623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2025556 - 2025476
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaa 81  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||  |||||||| |||||||||||| ||| |||||    
T  2025556 tgcttttggagatgagaattgattttgagaagctgaaccaaacatgttgaaattgcaagttttcacttttggagccaccaa 2025476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7636485 - 7636372
Alignment:
Q  1 tgcttttggagatgagaattgattttgagaagctgaacaaaacatattagaattgcaaattttcacttttgaagctaccaaaaatgtttttgagagatgt 100  Q
    ||||||| |||||||||||||||||||| || |||||  |||||| || ||||||| | ||||||||||||| ||||| |||| || |||| |  |||||    
T  7636485 tgcttttagagatgagaattgattttgaaaatctgaatcaaacatgttggaattgctagttttcacttttgaggctactaaaagtgctttt-aacgatgt 7636387  T
Q  101 agaagctgaaccaaa 115  Q
    |||||||||||||||    
T  7636386 agaagctgaaccaaa 7636372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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