View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_103 (Length: 264)

Name: NF0778_low_103
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_103
NF0778_low_103
[»] chr6 (15 HSPs)
chr6 (141-258)||(17095651-17095768)
chr6 (196-258)||(16655779-16655841)
chr6 (152-258)||(16870317-16870423)
chr6 (201-258)||(16784994-16785051)
chr6 (189-252)||(16794920-16794983)
chr6 (201-258)||(16778898-16778955)
chr6 (196-258)||(16558465-16558525)
chr6 (199-258)||(17067201-17067260)
chr6 (30-176)||(16985002-16985144)
chr6 (30-87)||(16558638-16558692)
chr6 (30-99)||(16655613-16655679)
chr6 (30-87)||(16870466-16870520)
chr6 (201-250)||(16841550-16841599)
chr6 (36-83)||(17067027-17067071)
chr6 (34-62)||(16784834-16784862)
[»] chr3 (2 HSPs)
chr3 (189-258)||(38941733-38941802)
chr3 (202-250)||(7055669-7055717)
[»] scaffold0256 (1 HSPs)
scaffold0256 (201-258)||(6881-6938)
[»] scaffold0133 (3 HSPs)
scaffold0133 (201-258)||(6222-6279)
scaffold0133 (189-258)||(10558-10627)
scaffold0133 (201-240)||(15867-15906)
[»] chr2 (1 HSPs)
chr2 (199-247)||(20151581-20151629)
[»] chr8 (1 HSPs)
chr8 (189-250)||(13375792-13375853)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 17095651 - 17095768
Alignment:
Q  141 attaaattaacttaaattaccacaaaatgttggttt--ca-cagattcatacaattcaaaatcaggaatgtgagctattttatgccaatcttcacctatt 237  Q
    |||||||||| |||||||||||| ||||||||||||  || ||| |||   ||||||||| ||||||||||||||||| | |||||||||||||||||||    
T  17095651 attaaattaaattaaattaccacgaaatgttggttttgcatcagtttc---caattcaaattcaggaatgtgagctatctaatgccaatcttcacctatt 17095747  T
Q  238 cctctcttgcatctctgctcc 258  Q
    |||||||| ||||||| ||||    
T  17095748 cctctcttacatctcttctcc 17095768  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 16655779 - 16655841
Alignment:
Q  196 aaatcaggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  16655779 aaatcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctcc 16655841  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 16870423 - 16870317
Alignment:
Q  152 ttaaattaccacaaaatgttggtttca---cagattcatacaattcaaaatcaggaatgtgagctattttatgccaatcttcacctattcctctcttgca 248  Q
    |||||||||||||||||||||||||     |||||||   ||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16870423 ttaaattaccacaaaatgttggttttttatcagattc---caaataaaattcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgca 16870327  T
Q  249 tctctgctcc 258  Q
    ||||| ||||    
T  16870326 tctcttctcc 16870317  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 16784994 - 16785051
Alignment:
Q  201 aggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  16784994 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctcc 16785051  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 16794920 - 16794983
Alignment:
Q  189 caattcaaaatcaggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctc 252  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  16794920 caattcaaattcaggaacgtgagctatcttatgccaatcttcaccttttcctctcttgcatctc 16794983  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 16778898 - 16778955
Alignment:
Q  201 aggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  16778898 aggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctcc 16778955  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 16558525 - 16558465
Alignment:
Q  196 aaatcaggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    |||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||||| ||||    
T  16558525 aaatcaggaatgtgagctatcttatgccaatcgtcacctattc--ctcttgcatctcttctcc 16558465  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 17067201 - 17067260
Alignment:
Q  199 tcaggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||  |||||| ||||    
T  17067201 tcaggaatgtgagctattttatgccaatcttcaccttttcctatcttcaatctcttctcc 17067260  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 16985002 - 16985144
Alignment:
Q  30 gatatgatattctctgcacacattgtttaatataataataagtctaaaatcacaccatatcatttgatatagtnnnnnnngtgaaa--ggaataaattaa 127  Q
    |||||||||||||||||||| |||||| |||||||      ||||||||||||||||||| ||||||||||||          |||  |||||||| |||    
T  16985002 gatatgatattctctgcacatattgttcaatataa------gtctaaaatcacaccatataatttgatatagttagaaagaataaaaaggaataaaataa 16985095  T
Q  128 agggattcgttaaattaaattaacttaaattaccacaaaatgttggttt 176  Q
    | || ||| |||||||||||||| |||||||||||   |||||||||||    
T  16985096 aaggcttccttaaattaaattaaattaaattaccagggaatgttggttt 16985144  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 16558692 - 16558638
Alignment:
Q  30 gatatgatattctctgcacacattgtttaatataataataagtctaaaatcacaccat 87  Q
    ||||||||||| ||||||||||||||| |||   |||||||||||| |||||||||||    
T  16558692 gatatgatattatctgcacacattgttcaat---ataataagtctataatcacaccat 16558638  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 16655613 - 16655679
Alignment:
Q  30 gatatgatattctctgcacacattgtttaatataataataagtctaaaatcacaccatatcatttgatat 99  Q
    |||| |||||| ||||||||||||||| |||   |||||||||||| ||||||||||| | |||||||||    
T  16655613 gataagatattatctgcacacattgttcaat---ataataagtctataatcacaccatctgatttgatat 16655679  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 16870520 - 16870466
Alignment:
Q  30 gatatgatattctctgcacacattgtttaatataataataagtctaaaatcacaccat 87  Q
    ||||||||||| ||||||||||||||| |||   |||||||||||| |||||||||||    
T  16870520 gatatgatattatctgcacacattgttcaat---ataataagtctataatcacaccat 16870466  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 16841550 - 16841599
Alignment:
Q  201 aggaatgtgagctattttatgccaatcttcacctattcctctcttgcatc 250  Q
    ||||||||||||||| |||||||||||||| ||| || || |||||||||    
T  16841550 aggaatgtgagctatcttatgccaatcttcccctgtttctttcttgcatc 16841599  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 17067027 - 17067071
Alignment:
Q  36 atattctctgcacacattgtttaatataataataagtctaaaatcaca 83  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||||    
T  17067027 atattctctgcacacattgttcaat---ataataagtctaaaatcaca 17067071  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 16784834 - 16784862
Alignment:
Q  34 tgatattctctgcacacattgtttaatat 62  Q
    |||||||||||||||||||||||||||||    
T  16784834 tgatattctctgcacacattgtttaatat 16784862  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 38941802 - 38941733
Alignment:
Q  189 caattcaaaatcaggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  38941802 caattcaaattcaggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctcc 38941733  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 7055717 - 7055669
Alignment:
Q  202 ggaatgtgagctattttatgccaatcttcacctattcctctcttgcatc 250  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  7055717 ggaatgtgagctatcttatgccaatcttcacctactcctctcttgcatc 7055669  T

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Target: scaffold0256 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 6881 - 6938
Alignment:
Q  201 aggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  6881 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctcc 6938  T

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Target: scaffold0133 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 6222 - 6279
Alignment:
Q  201 aggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  6222 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctcc 6279  T

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Target: scaffold0133; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 10558 - 10627
Alignment:
Q  189 caattcaaaatcaggaatgtgagctattttatgccaatcttcacctattcctctcttgcatctctgctcc 258  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  10558 caattcaacttcaggaatgtgagctatcttatgccaatcttcacctatacctctcttgcatctcttctcc 10627  T

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Target: scaffold0133; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 15867 - 15906
Alignment:
Q  201 aggaatgtgagctattttatgccaatcttcacctattcct 240  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  15867 aggaatgtgagctatcttatgccaatcttcaccttttcct 15906  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 20151581 - 20151629
Alignment:
Q  199 tcaggaatgtgagctattttatgccaatcttcacctattcctctcttgc 247  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  20151581 tcaggaatgttagctatcttatgccaatcttcacctattcctctcttgc 20151629  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 13375792 - 13375853
Alignment:
Q  189 caattcaaaatcaggaatgtgagctattttatgccaatcttcacctattcctctcttgcatc 250  Q
    ||||||||  ||||| ||||||||||| |||| ||||||||| |||||||||||||||||||    
T  13375792 caattcaacttcaggtatgtgagctatcttatcccaatcttctcctattcctctcttgcatc 13375853  T

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