View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_11 (Length: 537)
Name: NF0778_low_11
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 74 - 506
Target Start/End: Original strand, 49917960 - 49918397
Alignment:
| Q |
74 |
aaaagaatcaaaaggacgtgtattttgtatgaaagatgaaccaggagtgtatagggtgtggatgccaaatggtaaaacaccaggattagcaatatctaga |
173 |
Q |
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| T |
49917960 |
aaaagaatcaaaaggacgtgtattttgtatgaaagatgaaccaggagtgtatagggtgtggatgccaaatggtaaaacaccaggattagcaatatctaga |
49918059 |
T |
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| Q |
174 |
gcctttggtgactattgtatgaaggactatggtctaatctcagtgccagatgtgacacatagaaaacttaccactggggatcaatttatcatcttagcaa |
273 |
Q |
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| T |
49918060 |
gcctttggtgactattgtatgaaggactatggtctaatctcagtgccagatgtgacacatagaaaacttaccactggggatcaatttatcatcttagcaa |
49918159 |
T |
|
| Q |
274 |
cagatggggtatgtttcnnnnnnnatagagtgagcgtaacacatgtt----nnnnnnnnnnctatttatctttttaaatttttgaagtatttaattagta |
369 |
Q |
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| T |
49918160 |
cagatggggtatgtttctttttttatagagtgagcgtaacacatgttaaaaaaaaaaaaaactatttatctttttaaatttttgaagtatttaattaata |
49918259 |
T |
|
| Q |
370 |
-tttggttatgtcttaggtgtgggatgttgtatccaacgaagaggcagtgaagattgtttgtgcagcagcacataaagaaaaagcaggtgaaaggcttgt |
468 |
Q |
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| T |
49918260 |
ttttggttatgtcttaggtgtgggatgttgtatccaacgaagaggcagtgaagattgtttgtgcagcagcacataaagaaaaagcaggtgaaaggcttgt |
49918359 |
T |
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| Q |
469 |
gaaatatgccatacgtgaatggaaaagaaagagaagtg |
506 |
Q |
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| T |
49918360 |
gaaatatgccatacgtgaatggaaaagaaagagaagtg |
49918397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 78 - 286
Target Start/End: Complemental strand, 13734626 - 13734418
Alignment:
| Q |
78 |
gaatcaaaaggacgtgtattttgtatgaaagatgaaccaggagtgtatagggtgtggatgccaaatggtaaaacaccaggattagcaatatctagagcct |
177 |
Q |
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|||||||| ||| | || ||||||||| |||||||||||||||| ||||| || ||||||||||||||||| | |||||| |||||||||| ||||| | |
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| T |
13734626 |
gaatcaaacggaagagtgttttgtatggaagatgaaccaggagtatatagagtttggatgccaaatggtaagagtccaggactagcaatatcaagagcat |
13734527 |
T |
|
| Q |
178 |
ttggtgactattgtatgaaggactatggtctaatctcagtgccagatgtgacacatagaaaacttaccactggggatcaatttatcatcttagcaacaga |
277 |
Q |
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||||||| |||||| | || |||| ||| ||||||||||| |||||||||||||| |||||||| || ||| |||||||||| |||||||||||||||| |
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| T |
13734526 |
ttggtgattattgtgtaaaagactttggactaatctcagtaccagatgtgacacaaagaaaactcactactatggatcaatttgtcatcttagcaacaga |
13734427 |
T |
|
| Q |
278 |
tggggtatg |
286 |
Q |
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||||||||| |
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| T |
13734426 |
tggggtatg |
13734418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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