View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0778_low_111 (Length: 253)
Name: NF0778_low_111
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0778_low_111 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 52 - 253
Target Start/End: Original strand, 41131957 - 41132158
Alignment:
| Q |
52 |
ttactcttccgtcaaccaaatcctgtgcgccaatgttaacaactgtgcatccaatagccttggccgaattgaggcatagagtatggttctcatttctctc |
151 |
Q |
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| T |
41131957 |
ttactcttccgtcaaccaagtcctgtgcgccaatgttaacaactgtgcatccaatagccttggccgaattgaggcatagagtatggttctcatttctctc |
41132056 |
T |
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| Q |
152 |
ccaaagagaaagatttcgttttgtattgatggctcgctcgtctatagtcccaggcacagcaacattgataagcttactgcaatgaacgtgacataaatca |
251 |
Q |
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| T |
41132057 |
ccaaagagaaagatttcgttttgtattgatggctcgctcgtctatagtcccaggcacagcaacattgataagcttactgcaatgaacatgacataaatca |
41132156 |
T |
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| Q |
252 |
aa |
253 |
Q |
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|| |
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| T |
41132157 |
aa |
41132158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 42967838 - 42967659
Alignment:
| Q |
53 |
tactcttccgtcaaccaaatcctgtgcgccaatgttaacaactgtgcatccaatagccttggccgaattgaggcatagagtatggttctcatttctctcc |
152 |
Q |
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||||||||| ||||||| |||||||| ||||| ||||| |||||||| ||||||||||| || |||||||||| || || ||||| ||||| |||||| |
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| T |
42967838 |
tactcttccttcaaccatatcctgtgtaccaatattaaccactgtgcacccaatagcctttgctgaattgaggccaagggtgtggttttcattcctctcc |
42967739 |
T |
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| Q |
153 |
caaagagaaagatttcgttttgtattgatggctcgctcgtctatagtcccaggcacagcaacattgataagcttactgca |
232 |
Q |
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| T |
42967738 |
catggattaagatcccgttttgtgttaatggctcgctcatctattgtcccaggaacagcaacattaataagcttgctgca |
42967659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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