View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0778_low_115 (Length: 252)

Name: NF0778_low_115
Description: NF0778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0778_low_115
NF0778_low_115
[»] chr3 (20 HSPs)
chr3 (1-180)||(30810834-30811013)
chr3 (1-180)||(50392615-50392792)
chr3 (1-161)||(45150724-45150884)
chr3 (1-161)||(53687189-53687349)
chr3 (1-161)||(11263817-11263977)
chr3 (1-180)||(28182496-28182676)
chr3 (3-155)||(39251604-39251757)
chr3 (1-155)||(48181195-48181350)
chr3 (2-154)||(42274644-42274796)
chr3 (4-155)||(44610646-44610794)
chr3 (1-180)||(48254296-48254476)
chr3 (1-180)||(45488901-45489083)
chr3 (1-140)||(42074518-42074653)
chr3 (1-155)||(51229853-51230007)
chr3 (3-105)||(51407592-51407694)
chr3 (4-142)||(44328781-44328919)
chr3 (2-86)||(33025685-33025769)
chr3 (4-155)||(28883819-28883969)
chr3 (111-155)||(33330110-33330154)
chr3 (89-149)||(40237482-40237541)
[»] chr8 (15 HSPs)
chr8 (1-180)||(2025639-2025818)
chr8 (1-155)||(35802162-35802316)
chr8 (1-180)||(22936363-22936542)
chr8 (1-180)||(36821419-36821599)
chr8 (3-161)||(35164193-35164351)
chr8 (5-180)||(13015809-13015983)
chr8 (1-161)||(45276215-45276375)
chr8 (3-149)||(8416790-8416937)
chr8 (37-155)||(3590233-3590349)
chr8 (4-115)||(33165921-33166031)
chr8 (26-154)||(7637381-7637507)
chr8 (42-163)||(37683948-37684068)
chr8 (117-170)||(924267-924320)
chr8 (1-43)||(924227-924269)
chr8 (111-168)||(38023160-38023217)
[»] chr5 (15 HSPs)
chr5 (1-180)||(10900258-10900436)
chr5 (1-180)||(40979545-40979721)
chr5 (1-155)||(8958321-8958475)
chr5 (1-170)||(41742024-41742194)
chr5 (1-161)||(41039948-41040108)
chr5 (2-161)||(31905557-31905718)
chr5 (1-179)||(11018223-11018401)
chr5 (37-155)||(33387518-33387635)
chr5 (1-105)||(53535-53639)
chr5 (22-121)||(25256667-25256765)
chr5 (22-121)||(25320458-25320556)
chr5 (2-75)||(19356628-19356702)
chr5 (67-140)||(2526466-2526538)
chr5 (4-120)||(33082763-33082875)
chr5 (1-50)||(19375330-19375378)
[»] chr2 (14 HSPs)
chr2 (1-180)||(44002773-44002952)
chr2 (1-180)||(43342069-43342249)
chr2 (3-162)||(37640572-37640731)
chr2 (1-161)||(7473644-7473804)
chr2 (1-105)||(35458052-35458157)
chr2 (3-137)||(37996846-37996979)
chr2 (1-155)||(32497028-32497181)
chr2 (13-155)||(43695101-43695242)
chr2 (87-180)||(19860454-19860547)
chr2 (43-142)||(12015687-12015785)
chr2 (1-74)||(17480940-17481014)
chr2 (1-64)||(19860379-19860439)
chr2 (92-180)||(17481005-17481093)
chr2 (1-36)||(3738985-3739020)
[»] chr1 (25 HSPs)
chr1 (1-172)||(41512270-41512441)
chr1 (3-180)||(46033470-46033647)
chr1 (26-178)||(42137496-42137648)
chr1 (1-180)||(47655680-47655860)
chr1 (1-161)||(44740271-44740431)
chr1 (1-161)||(50030954-50031116)
chr1 (1-119)||(24075648-24075766)
chr1 (1-180)||(13509733-13509912)
chr1 (2-107)||(27416691-27416796)
chr1 (1-155)||(4485002-4485153)
chr1 (4-155)||(1762347-1762496)
chr1 (1-155)||(6706258-6706410)
chr1 (3-170)||(11050903-11051067)
chr1 (3-164)||(49430761-49430921)
chr1 (4-180)||(27067264-27067439)
chr1 (37-170)||(45179493-45179625)
chr1 (4-143)||(11829206-11829341)
chr1 (22-124)||(31100317-31100418)
chr1 (41-162)||(20473615-20473736)
chr1 (41-162)||(20557817-20557938)
chr1 (23-88)||(7385363-7385429)
chr1 (41-105)||(20364595-20364659)
chr1 (41-105)||(20546252-20546316)
chr1 (1-41)||(3850797-3850837)
chr1 (3-37)||(11051098-11051132)
[»] chr4 (18 HSPs)
chr4 (1-180)||(39732936-39733115)
chr4 (5-180)||(50523664-50523839)
chr4 (1-161)||(53663447-53663607)
chr4 (1-161)||(22606171-22606332)
chr4 (2-161)||(48407079-48407238)
chr4 (1-161)||(45105932-45106092)
chr4 (1-161)||(38767917-38768077)
chr4 (1-164)||(49723909-49724069)
chr4 (9-180)||(28963661-28963833)
chr4 (1-161)||(53403928-53404083)
chr4 (22-180)||(30418186-30418345)
chr4 (22-148)||(8510305-8510430)
chr4 (77-172)||(5937694-5937789)
chr4 (1-180)||(29385837-29386008)
chr4 (37-155)||(16202916-16203033)
chr4 (4-143)||(51677231-51677365)
chr4 (48-149)||(28911752-28911852)
chr4 (1-105)||(26457237-26457341)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-161)||(32874-33034)
[»] chr7 (19 HSPs)
chr7 (1-180)||(25472557-25472737)
chr7 (22-161)||(26826519-26826658)
chr7 (2-170)||(47158026-47158194)
chr7 (1-180)||(30825316-30825494)
chr7 (2-161)||(26827579-26827734)
chr7 (2-154)||(14999995-15000147)
chr7 (1-180)||(30139621-30139801)
chr7 (1-154)||(43664635-43664786)
chr7 (1-155)||(25970559-25970713)
chr7 (4-154)||(1999990-2000138)
chr7 (4-155)||(47085506-47085658)
chr7 (23-155)||(298478-298611)
chr7 (4-178)||(25191657-25191831)
chr7 (2-105)||(45202598-45202700)
chr7 (4-102)||(32450880-32450977)
chr7 (93-170)||(11341647-11341723)
chr7 (52-180)||(26169764-26169891)
chr7 (7-51)||(37371211-37371255)
chr7 (92-149)||(39857253-39857309)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-161)||(37821-37982)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-155)||(91662-91816)
[»] chr6 (6 HSPs)
chr6 (1-123)||(20838345-20838467)
chr6 (4-180)||(27825128-27825304)
chr6 (22-161)||(10683304-10683441)
chr6 (67-140)||(4146992-4147064)
chr6 (1-134)||(30134273-30134401)
chr6 (13-78)||(365735-365801)
[»] scaffold0808 (1 HSPs)
scaffold0808 (1-149)||(4216-4362)
[»] scaffold0069 (1 HSPs)
scaffold0069 (24-155)||(16960-17091)
[»] scaffold0184 (2 HSPs)
scaffold0184 (2-66)||(9601-9665)
scaffold0184 (124-180)||(9550-9606)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 30810834 - 30811013
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30810834 cctattattttcctttattgccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 30810933  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  30810934 tagcccccataaaatatttatggtcatgagttaccaagttttggattttcctttacggtgtttccattcaaaattactgt 30811013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 50392792 - 50392615
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392792 cctattattttcctttattgctctttatcatttctccttctttttgttttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 50392693  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||  ||  ||||||||||| |||||||    
T  50392692 tagcccccataaaatatttatggt-atgagttaccaagttttggattttcctttaccgt-attcctttcaaatttactgt 50392615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 45150724 - 45150884
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  45150724 cctattattttcctttattgccctttatcaattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttaatgaaccaaat 45150823  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||| ||  ||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  45150824 tagcccccgaaaaatgtttatggtcatgaattaccaaattttgaattttcctttatggtgt 45150884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 53687349 - 53687189
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  53687349 cctattatttttctttattgccctttatcaattctccttcattttgctttgtaattaatttgatgagccaaattaaataagaaaacttaaccaaccaaat 53687250  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||| |||||    
T  53687249 tagcctccaaaaaatgtttatgatcatgagttatcaagttttgaattttcctttacggtgt 53687189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 11263817 - 11263977
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||    
T  11263817 cctattattttcctttattgccctttatcaattctccttctttttgctttgtaattaatttgatgaacaaaattcaatcagaaaacttaatgaaccaaat 11263916  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    |||||  |  ||||| ||||||||||||||||| ||| ||||||||||||||||| |||||    
T  11263917 tagccctcgaaaaatgtttatggtcatgagttatcaaattttgaattttcctttacggtgt 11263977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 28182496 - 28182676
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    |||||||||||  |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  28182496 cctattattttcttttattgccctttatcagttctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaagacttaacgaaccaaat 28182595  T
Q  101 tagcctccataaaatatttatggtcatgagttacc-aagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||| ||  |||||||||||||||||||||| || || ||||||||||||||||| ||| | ||| |||| | |||||||    
T  28182596 tagcccccgaaaaatatttatggtcatgagttgccaaatttttgaattttcctttacggtatctccattcagatttactgt 28182676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 39251604 - 39251757
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39251604 tattatttttctttattgccctttatcaattctccttctttttggttggtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaatt 39251703  T
Q  102 agcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    |||| ||  ||||| ||||||||||||| ||||||| ||||||||||| |||||    
T  39251704 agcccccgaaaaatgtttatggtcatgacttaccaaattttgaatttttcttta 39251757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 48181195 - 48181350
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  48181195 cctattatttttctttattgccctttataaattcttcttctttttgctttgtaattaatttcatgaaccaaatttaatcagaaaacttaacgagccaaat 48181294  T
Q  101 tagcctcc-ataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    ||||| || | ||||| ||||||||||||||||||||| ||||  |||||||||||    
T  48181295 tagcccccgaaaaaatgtttatggtcatgagttaccaaattttagattttccttta 48181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 42274644 - 42274796
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    |||||||||| ||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  42274644 ctattattttcctttattgcccgttatcaattttccttctttttcctttgtaattaatttgatgaaccaaatttgatcagaaaacttatcgaaccaaatt 42274743  T
Q  102 agcctccataaaatatttatggtcatgagttaccaagttttgaattttccttt 154  Q
    |||| ||  ||||| ||||| ||||||||||||||| ||||||||||||||||    
T  42274744 agcccccgaaaaatgtttatagtcatgagttaccaaattttgaattttccttt 42274796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 44610794 - 44610646
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    ||||||||||||||||  ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||    
T  44610794 attatttttctttattgtcctttatcaatgctccttcttttcgatttgtatttaatttgatgaaccaaatttaatca-aaaatctaacgaatcaaattag 44610696  T
Q  104 cctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
     |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  44610695 -ctccataaaatatttatggt-atgagttaccaagttttgaatttttcttta 44610646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 48254476 - 48254296
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgt-atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||  |||    
T  48254476 cctattatttttctttattgccctttatcaattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaaggaattaaa 48254377  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||||     ||||| ||||||||||||| ||| ||| ||||||||||| ||||| |||||  || |||||| |||||||    
T  48254376 ttagcccttgaaaaatgtttatggtcatgacttatcaaattttgaatttttctttacggtgtccccattcaaatttactgt 48254296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 45489083 - 45488901
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgat-----gaaccaaatttaatcagaaaacttaacgaac 95  Q
    ||||||||||| |||||||  ||||||||||| ||||||  |||||||||||||||||||||||     |||||||||||||  |||||| |||||||||    
T  45489083 cctattattttcctttattgtcctttatcaatcctcctt--ttttgctttgtatttaatttgatttgatgaaccaaatttaactagaaaatttaacgaac 45488986  T
Q  96 caaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||||| ||||| ||||| || |||||| |||| | |||||||    
T  45488985 caaattaacctccagaaaatatttatggttatgagttaccaagttttggatttttctttacggcgtttccattcagatttactgt 45488901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 42074518 - 42074653
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |        
T  42074518 cctattattttcctttattgccctttaccaattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaacttaaccaagc---- 42074613  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagtt 140  Q
    ||||| ||  ||||| ||||||||||||||||||||||||    
T  42074614 tagcccccgaaaaatgtttatggtcatgagttaccaagtt 42074653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 51229853 - 51230007
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    |||||||||||  |||||  ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||  |||||||    
T  51229853 cctattattttcttttatatccctttatcaattctccttctttttgctttgtaattaatttgatgaatcaaatttaataagaaaacttaaccgaccaaat 51229952  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    ||||| ||  ||||  ||||| ||||||||||| ||| ||||| |||||||||||    
T  51229953 tagcccccgaaaaaagtttatcgtcatgagttatcaaattttggattttccttta 51230007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 51407592 - 51407694
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||    
T  51407592 tattattttcctttattgccctttatcaattctccttctttttgctttgtaattaatttgatgaaccgaatttaatcagaaaatttaacgaaacaaatta 51407691  T
Q  103 gcc 105  Q
    |||    
T  51407692 gcc 51407694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 44328781 - 44328919
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaat-cagaaaacttaacgaaccaaatta 102  Q
    |||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||  | ||||  |||||||||||||||    
T  44328781 attattttcctttattatcctttatcaattctcattctttttggtttgtatttaatttgataaaccaaatttaataaaaaaaaagtaacgaaccaaatta 44328880  T
Q  103 gcctccataaaatatttatggtcatgagttaccaagtttt 142  Q
    ||| | | |||||||||||||||| |||||||||||||||    
T  44328881 gcc-caaaaaaatatttatggtcaggagttaccaagtttt 44328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 33025769 - 33025685
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaac 86  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  33025769 ctattattttcctttactaccctttatcaattctccttctttttgctttgtaattaattcgatgaaccaaatttaatcagaaaac 33025685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 28883819 - 28883969
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    |||||||| ||||||   ||||||||||||||||||||||||  |||||||||||||| ||| |||| ||||||||| || | |||||||||||||||||    
T  28883819 attattttcctttatcgtcctttatcaattctccttctttttagtttgtatttaatttaatgtaccacatttaatcaaaatatttaacgaaccaaattag 28883918  T
Q  104 cctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    || ||| ||||||||||||||||  | ||||||||||||  ||||| |||||    
T  28883919 cc-ccaaaaaatatttatggtcaacaattaccaagttttagatttttcttta 28883969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 33330154 - 33330110
Alignment:
Q  111 aaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||    
T  33330154 aaaatatttatggtcatgagttaccaagttttggatttttcttta 33330110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 40237482 - 40237541
Alignment:
Q  89 aacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaatttt 149  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||||| |||||| ||||    
T  40237482 aacgaaccaaattagcc-ccataaaatatttatgaatatgagttaccaaattttgagtttt 40237541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 2025639 - 2025818
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  2025639 cctattattttcctttattgccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcataaaacttaacgaactaaat 2025738  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  2025739 tagcccccataaaatatttgtggtcatgagttaccaagttttggattttcctttacggtgtttcatttcaaatttactgt 2025818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 35802316 - 35802162
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||||||| ||||||||    
T  35802316 cctattattttcctttattgccctttatcaattctccttctttttgctttataattaatttgatgaacacaatttaatcagaaaacttaacaaaccaaat 35802217  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    ||||| ||  ||||| ||||||||||||||||||||| |||||||||||||||||    
T  35802216 tagcccccgaaaaatgtttatggtcatgagttaccaaattttgaattttccttta 35802162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 22936542 - 22936363
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  22936542 cctattattttcctttattggcctttatcaattctccttctttttgttttgtaatttaatttgatgaaccaaatttaattagaaaagttaacgaaccaaa 22936443  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||| ||| ||||||||||||||| ||| ||||||| ||||||||||| ||||| |||||  || |||||| |||||||    
T  22936442 ttagccccca-aaaatatttatggtcgtgacttaccaaattttgaatttttctttacggtgtccccattcaaatttactgt 22936363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 36821599 - 36821419
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatc-agaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||||| | |||||||| |||||||||    
T  36821599 cctattattttcctttattaccctttaacaattctcattctttttgctttctaattaatttgatgaaccaaatttaatcaaaaaaacttagcgaaccaaa 36821500  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||| ||  |||||||| ||||| |||||||||||||||||| |||||||| || ||||| ||| |||| | |||||||    
T  36821499 ttagcccccgaaaaatattaatggttatgagttaccaagttttggattttcctctacggtgtctccattcagatttactgt 36821419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 35164351 - 35164193
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    |||||||||  |||||| |||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  35164351 tattattttcttttattgccctttattaattctccttctttttgttttgtaattagtttgatgaaccaaatttaatcagaaaacttaaccaaccaaatta 35164252  T
Q  103 gcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||||   |||| ||||||||||||||||||||| ||||| |||||| |||| |||||    
T  35164251 gcctccgataaatgtttatggtcatgagttaccaaattttggattttcttttacggtgt 35164193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 13015809 - 13015983
Alignment:
Q  5 ttatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagc 104  Q
    ||||||| |||||||  ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| ||||||||     
T  13015809 ttattttcctttattgtcctttatcaattctctttctttttggtttgtatttaatttgatgaatcaaatttaatcaaaaaatttaacgaatcaaattag- 13015907  T
Q  105 ctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    | | | |||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||| |||| | |||||||    
T  13015908 cacaaaaaaatatttatggtcaagagttaccaagttttgaatttttctttacggtttttccgttcacatttactgt 13015983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45276375 - 45276215
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| |||| || |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  45276375 cctattattttcctttgttgccctttatcaattctcctactttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaa 45276276  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    |||||  ||| ||||| |||| |||||||| ||||| | ||||||||||| ||||| |||||    
T  45276275 ttagcgcccaaaaaatgttta-ggtcatgacttaccgaattttgaatttttctttacggtgt 45276215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 8416790 - 8416937
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatt-tgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||| | |||||||||||| ||||| ||||||||| ||||||||||||    
T  8416790 tattattttcctttattgccctttatcaatactccttctttttgctttgtaattaaatatgatgaaccaaaattaattagaaaacttcacgaaccaaatt 8416889  T
Q  102 agcctccataaaatatttatggtcatgagttaccaagttttgaatttt 149  Q
    |||  ||  ||||| ||||||||||||| ||||||| |||||||||||    
T  8416890 agcacccgaaaaatgtttatggtcatgacttaccaaattttgaatttt 8416937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 3590233 - 3590349
Alignment:
Q  37 cttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacca 136  Q
    |||||||||  ||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  3590233 cttctttttagtttgtatttaatttgatgaaccaaatttaataaaaaaa-ttaacgaactaaattagcctc-agaaaatatttatggtcatgagttacca 3590330  T
Q  137 agttttgaattttccttta 155  Q
    ||||||| ||||| |||||    
T  3590331 agttttggatttttcttta 3590349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 33165921 - 33166031
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    |||||||| |||||||  |||||||||||||||||| ||| || |||||||||||||||| ||| |||||||||||| |||| |||||||||||||||||    
T  33165921 attattttcctttattgtcctttatcaattctccttttttatggtttgtatttaatttgaggaaacaaatttaatcaaaaaatttaacgaaccaaattag 33166020  T
Q  104 cctccataaaat 115  Q
    || |||||||||    
T  33166021 cc-ccataaaat 33166031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 7637381 - 7637507
Alignment:
Q  26 tatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtc 125  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||||||| ||  ||| |||| | |||||||||||| ||| |||||||||||||||    
T  7637381 tatcaattctccttcattttgctttgtatttaatttgatgaaataaatttaaacaataaatttaatg-accaaattagcc-ccaaaaaatatttatggtc 7637478  T
Q  126 atgagttaccaagttttgaattttccttt 154  Q
    ||||| |||||| ||||  ||||||||||    
T  7637479 atgagctaccaaattttagattttccttt 7637507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 37684068 - 37683948
Alignment:
Q  42 ttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttt 141  Q
    ||||||||||||||| |||||||||||||||||| |||  |||| || |||||||||||||||| | |||||||||| ||| |||||| | |||||| ||    
T  37684068 ttttgctttgtatttgatttgatgaaccaaatttgatctaaaaatttgacgaaccaaattagcc-ctataaaatattaatgatcatgattcaccaagctt 37683970  T
Q  142 tgaattttcctttatggtgttt 163  Q
    ||| |||||| ||| |||||||    
T  37683969 tgagttttccattaaggtgttt 37683948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 924267 - 924320
Alignment:
Q  117 tttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttca 170  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  924267 tttatggtcatgagttactaagttttgaattttcctttgtggtgtttccgttca 924320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 924227 - 924269
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttcttt 43  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  924227 cctattatttttctttattgccctttatcaattctctttcttt 924269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 38023160 - 38023217
Alignment:
Q  111 aaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttccttt 168  Q
    ||||||||||| ||||||||||||||||||||  |||||| |||| | ||||||||||    
T  38023160 aaaatatttattgtcatgagttaccaagttttcgattttcttttacgatgtttccttt 38023217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 10900258 - 10900436
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10900258 cctattattttcctttattgccctttatcaattctctttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 10900357  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| |||||||    
T  10900358 tagcc-ccataaaagatttatggtcatgagttaccaagttttggattttcctttacagtgtttcctttcaaatttactgt 10900436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 40979545 - 40979721
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  40979545 cctattattctcctttattgccctttatcaattctccttctttttgccttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaat 40979644  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    || || ||||||||||||||||||||  | ||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  40979645 ta-cccccataaaatatttatggtca--aattaccaagttttggattttcctttacggtgtttcctttcaaatttactgt 40979721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 8958475 - 8958321
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8958475 cctattatttttctttattaccctttatcaattctcattctttttgctttgtaattaatttgatgaaccaaatttaatcaggaaacttaaccaaccaaat 8958376  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    || || ||||||||| ||||||||||||| |||||| |||||| |||||||||||    
T  8958375 taacccccataaaatgtttatggtcatgaattaccatgttttggattttccttta 8958321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 41742194 - 41742024
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  41742194 cctattatttttctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaa 41742095  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttca 170  Q
    |||||  ||| ||||||||||||||||||| ||||||| |||| |||||| ||||| ||||| ||| ||||    
T  41742094 ttagcgcccaaaaaatatttatggtcatgacttaccaaattttaaatttttctttacggtgtctccattca 41742024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 41040108 - 41039948
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| | || |||||    
T  41040108 cctattatttttctttattgccctttatcaattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagcaaatcaaat 41040009  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||| ||  ||||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  41040008 tagcccccgaaaaatgtttatggtcatgagttaccaaattttgaattttcctttacggtgt 41039948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 31905557 - 31905718
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  31905557 ctattattttcctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaat 31905656  T
Q  101 tagcctccataaaatatttatggtcat-gagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||  ||| ||||||||||||||||| || |||| || ||||||||||| ||||| |||||    
T  31905657 tagcgcccaaaaaatatttatggtcatagacttacaaaattttgaatttttctttacggtgt 31905718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 11018401 - 11018223
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| |||||||  |||||| |||||| ||||| ||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||    
T  11018401 cctattattttcctttattgtcctttagcaattccccttccttttgctttctaattaatttgatgaaccaaatttaatcaaaaaacttagcgaaccaaat 11018302  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactg 179  Q
    ||||| |  ||||||||||||||||||||| |||||||||||| ||||||||||| |||||  || |||||| ||||||    
T  11018301 tagcccctgtaaaatatttatggtcatgagctaccaagttttggattttcctttacggtgtccccattcaaatttactg 11018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 33387635 - 33387518
Alignment:
Q  37 cttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacca 136  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||| || |||||||||||||||||||||||| |    
T  33387635 cttctttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcct-cagaaaatatttatggtcatgagttacta 33387537  T
Q  137 agttttgaattttccttta 155  Q
    ||||||| ||||| |||||    
T  33387536 agttttggatttttcttta 33387518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 53639 - 53535
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    |||||||||| |||||||| |||||||||||||||| || |||||||||| || || |||||||||||| |||||||| |||||||||||||||||||||    
T  53639 cctattatttctctttattgccctttatcaattctcattttttttgctttttaattgatttgatgaaccgaatttaattagaaaacttaacgaaccaaat 53540  T
Q  101 tagcc 105  Q
    |||||    
T  53539 tagcc 53535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 25256765 - 25256667
Alignment:
Q  22 cctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttat 121  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||||    
T  25256765 cctttatcaattctccttttttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcct-cagaaaatatttat 25256667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 25320556 - 25320458
Alignment:
Q  22 cctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttat 121  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||||    
T  25320556 cctttatcaattctccttttttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcct-cagaaaatatttat 25320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 19356628 - 19356702
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgt-atttaatttgatgaaccaaattt 75  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  19356628 ctattatttttcattattgccctttatcaattctccttctttttcctttgtaatttaatttgatgaatcaaattt 19356702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 2526466 - 2526538
Alignment:
Q  67 accaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 140  Q
    |||||||||||||| |||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  2526466 accaaatttaatcaaaaaatttaacgaaccaaattagcc-ccataaaatatttacggacatgagttaccaagtt 2526538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 33082875 - 33082763
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    ||||||||||||||||  | || |||||||    ||||||||| |||||||||||||| |||||||||||||||||  |||| ||||||||| ||| |||    
T  33082875 attatttttctttattgtctttcatcaatt---attctttttggtttgtatttaatttaatgaaccaaatttaatcgaaaaaattaacgaactaaactag 33082779  T
Q  104 cctccataaaatattta 120  Q
    ||| |||||||||||||    
T  33082778 cct-cataaaatattta 33082763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19375378 - 19375330
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgcttt 50  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  19375378 cctattattttcctttatg-ccctttatcaattctccttctttttgcttt 19375330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 44002773 - 44002952
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  44002773 cctattatttttctttatcgccctttatcaattatccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaat 44002872  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||| |||||||    
T  44002873 tagcccccataaaatatttatggtcatgagttaccaagttttggattgtcctttacggtgtttcatttcaaatttactgt 44002952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 43342249 - 43342069
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||    
T  43342249 cctattattttcctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacaaaccaaa 43342150  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||| |   ||||||||||||||||||| ||||||| ||||||||||| |||||  ||||  || |||||| |||||||    
T  43342149 ttagcccctgaaaaatatttatggtcatgacttaccaaattttgaatttttctttacagtgtccccattcaaatttactgt 43342069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 37640731 - 37640572
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  37640731 tattattttcctttattgccctttataaattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttaacgaaccaaatta 37640632  T
Q  103 gcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtt 162  Q
     || |   ||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  37640631 acccctgaaaaatgtttatggtcatgagttaacaaattttgaattttcctttacggtgtt 37640572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7473644 - 7473804
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    |||||||||||  ||||||  ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||    
T  7473644 cctattattttcttttattgtcctttatcaattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagtgaaccaaat 7473743  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||| ||  ||||| ||||||||||||| ||||||| |||| |||||||||||| |||||    
T  7473744 tagcccccgaaaaatgtttatggtcatgaattaccaaattttaaattttcctttacggtgt 7473804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 35458157 - 35458052
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgt-atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  35458157 cctattatttttctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaatcatatttaattagaaaacttaacgaaccaaa 35458058  T
Q  100 ttagcc 105  Q
    ||||||    
T  35458057 ttagcc 35458052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 37996846 - 37996979
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    |||||||||  |||||| |||| ||||||||||| |  ||||||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||    
T  37996846 tattattttcatttattgccctgtatcaattctcata-tttttgctttgtaatttatttgatgaaccaaatttaatcggaaaacttaacgaatcaaatta 37996944  T
Q  103 gcctccataaaatatttatggtcatgagttaccaa 137  Q
    || |||| ||||| |||||| | ||||||||||||    
T  37996945 gcttccaaaaaatgtttatgataatgagttaccaa 37996979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 32497181 - 32497028
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| || ||||||||||||| || | | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32497181 cctattattttcctttattgcc-tttatcaattctcattatctctgctttgtaattaatttgatgaatcaaatttaatcagaaaacttaacgaaccaaat 32497083  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    ||    ||  ||||| ||||||||||| ||||  ||| ||||  |||||||||||    
T  32497082 tattacccgaaaaatgtttatggtcatcagttgtcaaattttagattttccttta 32497028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 43695101 - 43695242
Alignment:
Q  13 ctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataa 112  Q
    |||||||  ||||||||||||||||||||||||| |||||||||||||| ||| ||||  |||||| | ||||  |||||||||||||||||| ||| ||    
T  43695101 ctttattgtcctttatcaattctccttctttttggtttgtatttaatttaatgtaccacgtttaataaaaaaatataacgaaccaaattagcc-ccaaaa 43695199  T
Q  113 aatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    |||||| | |||||  ||||||||||||||| ||||| |||||    
T  43695200 aatattcacggtcaacagttaccaagttttggatttttcttta 43695242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 19860454 - 19860547
Alignment:
Q  87 ttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||| || |||||| |||| | |||||||    
T  19860454 ttaacgaaccaaattagcttccagaaaatatttatggttatgagttaccaagttttggattttcctttacggcgtttccgttcagatttactgt 19860547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 12015785 - 12015687
Alignment:
Q  43 tttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtttt 142  Q
    ||||||||||||||||||| ||||||||||||| || | |||| || |||||| |||||||||| |||||||||||||||||||||| ||||||| ||||    
T  12015785 tttgctttgtatttaatttaatgaaccaaatttgattaaaaaatttgacgaacgaaattagcct-cataaaatatttatggtcatgatttaccaaatttt 12015687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17480940 - 17481014
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgt-atttaatttgatgaaccaaatt 74  Q
    ||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  17480940 cctattattttcctttattgccctttatcaattctccttcattttgctttgtaatttaatttgatgaaccaaatt 17481014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19860379 - 19860439
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgat 64  Q
    ||||||||||| |||||||  |||||||||||||||   | |||||||||||||||||||||||    
T  19860379 cctattattttcctttattgtcctttatcaattctc---cgttttgctttgtatttaatttgat 19860439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 17481005 - 17481093
Alignment:
Q  92 gaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||||||||||| ||  |||||||||||| |||||| ||||||| |||| |||||| ||||| | |||  || |||||| |||||||    
T  17481005 gaaccaaattagcccccgaaaaatatttatgatcatgacttaccaaattttaaatttttctttacgatgtccccattcaaatttactgt 17481093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3739020 - 3738985
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctc 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3739020 cctattatttttctttattgccctttatcaattctc 3738985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 41512270 - 41512441
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41512270 cctattattttcctttattgtcctttatcaattctccttctttttgttttgtatttagtttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 41512369  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaa 172  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  41512370 tagcccccataaaatatttatggccatgagttaccaagttttggattttcctttacggtgtttcctttcaaa 41512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 46033647 - 46033470
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  46033647 tattattttcctttattgctctttatcaattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaactcaacaaaccaaatta 46033548  T
Q  103 gcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||| ||| ||||||||||  ||||||||||||||||||||  ||||||||||  ||||||||| |||| | |||||||    
T  46033547 gcccccaaaaaatatttactgtcatgagttaccaagttttagattttcctttgcggtgtttccgttcagatttactgt 46033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 42137648 - 42137496
Alignment:
Q  26 tatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtc 125  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  42137648 tatcaattctccttctttttgctttgtatttaatctgataaaccaaatttaatcagaaaacttaacgaaccaacttaacccccataaaatatttatggtc 42137549  T
Q  126 atgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattact 178  Q
    |||||||||||| ||||  ||||||||||| ||||||||| |||||| |||||    
T  42137548 atgagttaccaaattttatattttcctttacggtgtttccattcaaatttact 42137496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 47655860 - 47655680
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  47655860 cctattattttcctttattgccctttatcaattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaa 47655761  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||| ||  ||||||||||||||||||| ||||||| ||||||||||| ||||| ||| |  || |||||| |||||||    
T  47655760 ttagcccccgaaaaatatttatggtcatgacttaccaaattttgaatttttctttacggtatccccattcaaatttactgt 47655680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 44740271 - 44740431
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| || | || ||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  44740271 cctattattttcctattttgccctttatcaattctccttctgtttgctttgtaattaacttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 44740370  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||||||  ||||||||||| ||||||||||||||| ||||| |||||| |||| |||||    
T  44740371 tagcctccgaaaaatatttattgtcatgagttaccaaattttggattttcttttacggtgt 44740431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 50030954 - 50031116
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  50030954 cctattattttcctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaacttaacgaaccaaa 50031053  T
Q  100 ttagcctcc-ataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||| ||| | ||||| ||||||||||||| ||||||| ||||||||||| ||||| |||||    
T  50031054 ttagcgtccaaaaaaatgtttatggtcatgacttaccaaattttgaatttttctttacggtgt 50031116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 24075648 - 24075766
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    |||||||||||  |||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24075648 cctattattttcatttattgccctttatcaattctatttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 24075747  T
Q  101 tagcctccataaaatattt 119  Q
    |||||||||||||||||||    
T  24075748 tagcctccataaaatattt 24075766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13509912 - 13509733
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| | |||||| |||||||||||    
T  13509912 cctattattttcctttattgccctttatcaatt-tccttctttttgctttgtaatttaacttgatgaaccaaatttaattacaaaactgaacgaaccaaa 13509814  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||| ||  ||||| ||||||||||||| ||||||| ||||||||||| ||||| |||||  || |||||| |||||||    
T  13509813 ttagcccccgaaaaatgtttatggtcatgacttaccaaattttgaatttttctttacggtgtccccattcaaatttactgt 13509733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 27416691 - 27416796
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  27416691 ctattattttcctttattgccctttatcaattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaatt 27416790  T
Q  102 agcctc 107  Q
    ||||||    
T  27416791 agcctc 27416796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4485153 - 4485002
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||||||||||| ||||||||||||| |||||   ||||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||    
T  4485153 cctattatttttctttattgccctttatcaattatcctt---tttgctttgtaattaatttgatgaaccaaatttaattagaaaacttaacgaaactaat 4485057  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    ||||| ||  ||||||||||||||||||| ||||||| ||||  |||||| ||||    
T  4485056 tagcccccgaaaaatatttatggtcatgatttaccaaattttagattttctttta 4485002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 1762347 - 1762496
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    |||||||| |||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||| |||| |||||||||||||||||    
T  1762347 attattttcctttattgtcctttatcaattctccttctttttggtttgtatttaatttgatgaaccaaattgtatcaaaaaatttaacgaaccaaattag 1762446  T
Q  104 cctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    ||| |  |||||||||| |||||||||||||||| ||||| ||||| |||||    
T  1762447 cct-cggaaaatattta-ggtcatgagttaccaaattttggatttttcttta 1762496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 6706258 - 6706410
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| |||||||||||||||||||   ||||  || || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  6706258 cctattattttcctttattgccctttatcaattctcctt---tttgaattataatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaa 6706354  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    |||||||||  ||||| ||||||||||||| ||||||| |||| || ||| |||||    
T  6706355 ttagcctccgaaaaatgtttatggtcatgacttaccaaattttaaaattttcttta 6706410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 11051067 - 11050903
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    ||||||||| ||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||||||| ||| |||| |||| | | |||||||    
T  11051067 tattattttcctttattaccctttatcaattctcctc---tttgctttgtaattaatttgatgaaccaaatttattcaaaaaaattaatggatcaaatta 11050971  T
Q  103 gcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttca 170  Q
    |||  |  |||||||||||||| |||||||||||| ||||  ||||||||||| ||||||||| ||||    
T  11050970 gccctcgaaaaatatttatggtaatgagttaccaaattttagattttcctttacggtgtttccgttca 11050903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 49430761 - 49430921
Alignment:
Q  3 tattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    |||||||||  |||||| ||||||| || |||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||  |    
T  49430761 tattattttcttttattgcccttta-catttcttcttctttttgctttgtaattaatttaatgaaccaaatttaatcaaaaaacttaacgaaccaaacca 49430859  T
Q  103 gc-ctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttc 164  Q
    || ||| | ||||||||||||||||||||| ||||| ||||  ||||||||||| ||||||||    
T  49430860 gctctcga-aaaatatttatggtcatgagtcaccaaattttagattttcctttacggtgtttc 49430921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 27067264 - 27067439
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    |||||||| |||||||  |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||| |||||||| |||||||     
T  27067264 attattttcctttattgtcctttatcaattctccttctctttgatttgtatttaatttgatgaaccaaatttaataaaaaaaattaacgaatcaaattaa 27067363  T
Q  104 cctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
     | | | || ||||||||||||| |||||||||| ||||  ||||| ||||| ||| ||||| |||| | |||||||    
T  27067364 ac-ctaaaagatatttatggtcaggagttaccaaattttagatttttctttacggtttttccgttcagatttactgt 27067439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 45179493 - 45179625
Alignment:
Q  37 cttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacca 136  Q
    |||||||||| |||||||||||||||||||| |||||||||||| |||| |  |||||||||||||||| | | |||||||||||||||||| |||||||    
T  45179493 cttctttttgatttgtatttaatttgatgaatcaaatttaatcaaaaaaatctacgaaccaaattagcc-ctacaaaatatttatggtcatgggttacca 45179591  T
Q  137 agttttgaattttcctttatggtgtttcctttca 170  Q
    ||||||| |||||  |||| ||| ||||| ||||    
T  45179592 agttttggatttttatttacggtttttccgttca 45179625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 11829206 - 11829341
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    |||||||| |||||||  ||||||||||||    || |||||  |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||     
T  11829206 attattttcctttattgtcctttatcaatt---tttattttttttttgtatttaatttgaggaaccaaatttaatcaaaaaatttaacgaaccaaattaa 11829302  T
Q  104 cctccataaaatatttatggtcatgagttaccaagttttg 143  Q
    || ||||||||||||||||    |||||||||||||||||    
T  11829303 cc-ccataaaatatttatgaatctgagttaccaagttttg 11829341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 31100418 - 31100317
Alignment:
Q  22 cctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttat 121  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| |||| |||||||| ||||||| || ||| |||||||| ||    
T  31100418 cctttatcaattctccttctttttggtttgtatttaatttaatgtaccacatttaatcaaaaaatttaacgaatcaaattaacc-ccaaaaaatattcat 31100320  T
Q  122 ggt 124  Q
    |||    
T  31100319 ggt 31100317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 20473736 - 20473615
Alignment:
Q  41 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 140  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  || | |||||||||||||| | | ||| | ||||||| ||||| |||||||  |    
T  20473736 tttttgctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagccccaaaaaattgtttatggccatgatttaccaaact 20473637  T
Q  141 ttgaattttcctttatggtgtt 162  Q
    |||  |||||||||||||||||    
T  20473636 ttgggttttcctttatggtgtt 20473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 20557817 - 20557938
Alignment:
Q  41 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 140  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  || | |||||||||||||| | | ||| | ||||||| ||||| |||||||  |    
T  20557817 tttttgctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagccccaaaaaattgtttatggccatgatttaccaaact 20557916  T
Q  141 ttgaattttcctttatggtgtt 162  Q
    |||  |||||||||||||||||    
T  20557917 ttgggttttcctttatggtgtt 20557938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 7385363 - 7385429
Alignment:
Q  23 ctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaactt 88  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||    
T  7385363 ctttatcaattctccttctttttactttgtaatttaatttgatgaatcaaatttaattagaaaactt 7385429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 20364659 - 20364595
Alignment:
Q  41 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 105  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  || | ||||||||||||||    
T  20364659 tttttgctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagcc 20364595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 20546252 - 20546316
Alignment:
Q  41 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 105  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  || | ||||||||||||||    
T  20546252 tttttgctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagcc 20546316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3850837 - 3850797
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttct 41  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  3850837 cctattattttcctttattgccctttatcaattctccttct 3850797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 11051132 - 11051098
Alignment:
Q  3 tattatttttctttattaccctttatcaattctcc 37  Q
    ||||||||| |||||||||||||||||||||||||    
T  11051132 tattattttcctttattaccctttatcaattctcc 11051098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 39732936 - 39733115
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  39732936 cctattattttcctttatcgccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaat 39733035  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    || || ||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||||||    
T  39733036 taacccccataaaatatttatggtcatgagttaccaagttttggattgtccttcacggtgtttcctttcaaatttactgt 39733115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 50523839 - 50523664
Alignment:
Q  5 ttatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagc 104  Q
    ||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50523839 ttattttccattattgccctttatcaattcttcttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagc 50523740  T
Q  105 ctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    | ||||||||||||||||||||||||||||||| ||||  |||||| |||| |||||||||||||||| |||||||    
T  50523739 ccccataaaatatttatggtcatgagttaccaaattttagattttcatttacggtgtttcctttcaaatttactgt 50523664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 53663607 - 53663447
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  53663607 cctattattttcctttattaccctttatcaatcctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaacttaacgaacctaat 53663508  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||| |   ||||| ||||||||||||||||||||| ||||| ||||||||||| |||||    
T  53663507 tagcccctgaaaaatgtttatggtcatgagttaccaaattttggattttcctttacggtgt 53663447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 22606332 - 22606171
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  22606332 cctattatttttctttattgccctttatcaattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagcgaaccaaat 22606233  T
Q  101 tagcctccataaaatatttatggtcatgag-ttaccaagttttgaattttcctttatggtgt 161  Q
    ||||| ||  ||||| |||||||||||||| || |||| ||||||||||||||||| |||||    
T  22606232 tagcccccgaaaaatgtttatggtcatgagtttgccaaattttgaattttcctttacggtgt 22606171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 48407079 - 48407238
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||| ||||||    
T  48407079 ctattatttttctttattgccctttatcaattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcataaaacgtagcgaatcaaatt 48407178  T
Q  102 agcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    |||| ||  ||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  48407179 agcccccgaaaaatatttatggtcatgagttaccaaattttgaattttcctttacggtgt 48407238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 45105932 - 45106092
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||| | |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |||||| |    
T  45105932 cctattattttcctttacttccctttatcaattctctttctttttactttgtaattaatttgatgaaccaaatttaataagaaaacttaaccaaccaatt 45106031  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||| ||  ||| | |||||||||||||||||||||||||| |||||||||||| |||||    
T  45106032 tagcccccgaaaattgtttatggtcatgagttaccaagttttaaattttcctttacggtgt 45106092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 38767917 - 38768077
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||    
T  38767917 cctattattttcctttatttcactttatcaattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcggaaaacttagcgaaccaaat 38768016  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||  |   ||||| ||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  38768017 tagcacctgaaaaatgtttatggtcgtgagttaccaaattttgaatttttctttacggtgt 38768077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 49723909 - 49724069
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| ||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||    
T  49723909 cctattattttcctttatt-ccctttat--attctccttctttttgctttgtaattaatttgataaaccaaatttaatcagaaaaattaacgaaccaaat 49724005  T
Q  101 tag-cctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttc 164  Q
    ||| |||  | ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  49724006 tagtccttga-aaaatgtttatggtcatgagttaccaaattttggattttcctttacggtgtttc 49724069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 28963833 - 28963661
Alignment:
Q  9 ttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctc 107  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||||      
T  28963833 ttttctttattgccctttatcaattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaattaaattagccct 28963734  T
Q  108 cataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
       ||||| ||||||||||||| ||| ||| ||||||||||| ||||| ||||| ||| |||||| |||||||    
T  28963733 tgaaaaatgtttatggtcatgacttatcaaattttgaatttttctttacggtgtctccattcaaatttactgt 28963661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 53404083 - 53403928
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    |||||| |||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||     ||||||||||| |||||||||||||    
T  53404083 cctattgttttcctttattatcctttatcaattctccttttttttgctttgtaattaatttgatgaacca-----aatcagaaaacataacgaaccaaat 53403989  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||| ||  ||||| ||||||||||||||||||||| || |||||||| ||||| |||||    
T  53403988 tagccaccgaaaaatgtttatggtcatgagttaccaaattctgaatttttctttacggtgt 53403928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 30418345 - 30418186
Alignment:
Q  22 cctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatattta 120  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||  ||||| ||||    
T  30418345 cctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaatcaaattagcccccgaaaaatgttta 30418246  T
Q  121 tggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||||||| ||| | | ||||||||||| ||||| ||| |  || |||||| |||||||    
T  30418245 tggtcatgacttatccaattttgaatttttctttacggtatccccattcaaatttactgt 30418186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 8510305 - 8510430
Alignment:
Q  22 cctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttat 121  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||    
T  8510305 cctttatcaattctccttccttttgctttgtatctaatttaatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc-ctagaaaataattat 8510403  T
Q  122 ggtcatgagttaccaagttttgaattt 148  Q
    |||||||| ||| ||||||||| ||||    
T  8510404 ggtcatgaattatcaagttttggattt 8510430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 5937789 - 5937694
Alignment:
Q  77 atcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaa 172  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  5937789 atcagaaaacttaacgaaccaaattagcccccataaaatatttatgatcatgagttaccaagttttggattttcctttacggtgtttcctttcaaa 5937694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 29386008 - 29385837
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||       |||||| |||||||||| |||||| ||||||||||||||    
T  29386008 cctattatttttctttatg-ccctttatcaattctccttctttttgctttgtat-------gatgaatcaaatttaattagaaaatttaacgaaccaaat 29385917  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    ||||| ||  |||||||||| |||||||| ||||| | |||||||||||  |||| |||||  || |||||| |||||||    
T  29385916 tagcccccgaaaaatatttaaggtcatgacttacccaattttgaatttttatttacggtgtccccattcaaatttactgt 29385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 16203033 - 16202916
Alignment:
Q  37 cttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacca 136  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||| |  ||||||||||||||||||||||||||    
T  16203033 cttctttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcct-cggaaaatatttatggtcatgagttacca 16202935  T
Q  137 agttttgaattttccttta 155  Q
    ||||||  ||||| |||||    
T  16202934 agttttagatttttcttta 16202916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 51677231 - 51677365
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    ||||||||  |||||| |||||||||||||||||||||||||    | ||||||||||||||||||||||||||||| |||| | ||||| |||||||||    
T  51677231 attattttcttttatttccctttatcaattctccttcttttt----tttatttaatttgatgaaccaaatttaatcaaaaaattcaacgatccaaattag 51677326  T
Q  104 cctccataaaatatttatggtcatgagttaccaagttttg 143  Q
     |||||  ||||||||||| ||||||||||||||||||||    
T  51677327 -ctccaggaaatatttatgatcatgagttaccaagttttg 51677365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 28911752 - 28911852
Alignment:
Q  48 tttgtatttaatttgatgaaccaaatttaatcagaaaactt-aacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaat 146  Q
    |||||||||||||||| || ||||||||||||| |||| || ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |    
T  28911752 tttgtatttaatttgagga-ccaaatttaatcaaaaaaatttaacgaaccaaattagcc-ccataaaatatttatgaacatgagttaccaagttttgagt 28911849  T
Q  147 ttt 149  Q
    |||    
T  28911850 ttt 28911852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 26457237 - 26457341
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||  ||||||| | |||||||||||||| ||||||||||||| || || |||||||| ||| |||||||| ||||||||| ||||| |||||    
T  26457237 cctattatttccctttattgctctttatcaattctcattctttttgctttttaattgatttgatgtaccgaatttaattagaaaacttgacgaatcaaat 26457336  T
Q  101 tagcc 105  Q
    |||||    
T  26457337 tagcc 26457341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 33034 - 32874
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||    
T  33034 cctattattttcctttattgccctttatcaattatccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacctaacgaaccaaat 32935  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
     |||| ||  ||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  32934 cagcccccgaaaaatatttatggtcatgagttaccaaattttgaattttcctttacggtgt 32874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 25472737 - 25472557
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  25472737 cctattattttcctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaa 25472638  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||| ||  |||||||||||||| |||| ||||| | ||||||||||| ||||| |||||  || |||||| |||||||    
T  25472637 ttagcccccgaaaaatatttatggtaatgacttacccaattttgaatttttctttagggtgtccccattcaaatttactgt 25472557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 26826519 - 26826658
Alignment:
Q  22 cctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttat 121  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| |||||    
T  26826519 cctttatcaattctccttctttttgctttgtaattaatgtgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccgaaaaatgtttat 26826618  T
Q  122 ggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  26826619 ggtcatgagttaccaaattttgaattttcctttacggtgt 26826658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 170
Target Start/End: Complemental strand, 47158194 - 47158026
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttcttttt--gctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    |||||||||||||||||| |||||||||||||||| || |||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  47158194 ctattatttttctttattgccctttatcaattctctttttttttttgctttgtattta-tttgatgaaccatatttaattagaaaacttaacgaaccaaa 47158096  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttca 170  Q
    ||||| |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  47158095 ttagc-tccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattca 47158026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 30825316 - 30825494
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| ||||||||    
T  30825316 cctattatttttctttattgccctttatcaattctccttctttttgttttgtaattaatttgat-aaccaaatttaatcagaaaacttaaccaaccaaat 30825414  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    || || ||   |||| ||||||||||||||||||||| |||||||||||| |||| |||||  || |||||| |||||||    
T  30825415 tatcccccgataaatgtttatggtcatgagttaccaaattttgaattttcttttacggtgtccccattcaaatttactgt 30825494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 26827734 - 26827579
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||    
T  26827734 ctattatttttctttattgtcctttatcaattctccttctttttgctttgtaattaatttgatgaaccaaatttaat----aaacttaacgaaccaaatt 26827639  T
Q  102 agcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    ||||  |  ||||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  26827638 agccctcgaaaaatgtttatggtcatgagttaccaaattttgaattttcctttacggtgt 26827579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 14999995 - 15000147
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  14999995 ctattattttcctttattaccctttatcaatcctccttcttttttctttgtaattaatttgatgaaccaaatttaatcagaaaacttaaagaacctaatt 15000094  T
Q  102 agcctccataaaatatttatggtcatgagttaccaagttttgaattttccttt 154  Q
    |||| |   ||||| ||||||||||||||||||||| ||||| ||||||||||    
T  15000095 agcccctgaaaaatgtttatggtcatgagttaccaaattttggattttccttt 15000147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 30139801 - 30139621
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  30139801 cctattattttcctttattgccctttatcaattctccttctttttgctttgtaatttaatttgataaaccaaatttaattagaaaacttaacgaaccaaa 30139702  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||| ||  ||||| |||| |||||||| ||||||| ||||||||||| ||||| | |||  || |||||| |||||||    
T  30139701 ttagcccccgaaaaatgtttacggtcatgacttaccaaattttgaatttttctttacgatgtccccattcaaatttactgt 30139621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 43664786 - 43664635
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  43664786 cctattattttcctttattgccttttat-aattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaat 43664688  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttt 154  Q
    ||||| ||| ||||| |||||||||| |||||| ||||||||| ||||||||||    
T  43664687 tagccccca-aaaatgtttatggtcacgagttatcaagttttggattttccttt 43664635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 25970559 - 25970713
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||   | |||||    
T  25970559 cctattattttcctttattgctctttatcaattctccttctttttgctttgttattaatttgatgaaccaaatttaatgagaaaacttaatagatcaaat 25970658  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    |||||  || ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  25970659 tagccatcaaaaaatatttatggtcatgaattaccaaattttggattttccttta 25970713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 2000138 - 1999990
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag 103  Q
    |||||||| |||||||| ||||| |||| | |||||||||||| |||||||||||||||| ||| |||||||||||| |||| |||||||||||||||||    
T  2000138 attattttcctttattatcctttgtcaaatttccttctttttggtttgtatttaatttgacgaagcaaatttaatcaaaaaatttaacgaaccaaattag 2000039  T
Q  104 cctccataaaatatttatggtcatgagttaccaagttttgaattttccttt 154  Q
    |  ||| ||||||||||||||||||||||| ||||||||| ||||| ||||    
T  2000038 c--ccaaaaaatatttatggtcatgagttatcaagttttgtatttttcttt 1999990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 47085658 - 47085506
Alignment:
Q  4 attatttttctttattaccctttatcaattctcc--ttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    ||||||||||||||||  |||||||||||||||   || |||||  ||||||||||||||||||||||||||||||||| |||| |||  ||||||||||    
T  47085658 attatttttctttattgtcctttatcaattctctattttttttttgtttgtatttaatttgatgaaccaaatttaatcaaaaaatttatggaaccaaatt 47085559  T
Q  102 agcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
    | ||| |||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  47085558 aacct-cataaaatatttatggtcatgagttaccaaattttggatttttcttta 47085506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 298611 - 298478
Alignment:
Q  23 ctttatcaattctccttctttttgcttt--gtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatattta 120  Q
    ||||||||||||||||| |||||  ||   |||||||||||||||||||||||||||||| |||| ||||| | ||||||||| ||||| ||||||||||    
T  298611 ctttatcaattctccttttttttttttgaagtatttaatttgatgaaccaaatttaatcaaaaaatttaacaatccaaattag-ctccagaaaatattta 298513  T
Q  121 tggtcatgagttaccaagttttgaattttccttta 155  Q
    ||||||||||||| ||||||||| ||||| |||||    
T  298512 tggtcatgagttatcaagttttggatttttcttta 298478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 25191831 - 25191657
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttcttttt-gctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    ||||||||  ||||||  |||||||||||||||||||||||| | ||||||||||||| ||||||||||| || |||| || | ||||||||||||||||    
T  25191831 attattttcttttattgtcctttatcaattctccttcttttttggtttgtatttaattcgatgaaccaaagttgatcaaaagatttaacgaaccaaatta 25191732  T
Q  103 gcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattact 178  Q
     || ||| |||||||||||| ||| ||||| |||| | ||||||||| ||||| ||| ||||| |||||| |||||    
T  25191731 acc-ccaaaaaatatttatgatcaagagttgccaaatattgaatttttctttacggtttttccattcaaatttact 25191657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 45202598 - 45202700
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatt 101  Q
    ||||||||||||||||||   |||||||||||||| |||||||||||||| | ||||||| ||||||| |||| ||||||||||||||| ||||||||||    
T  45202598 ctattatttttctttattgttctttatcaattctcattctttttgctttgaaattaatttaatgaacc-aattaaatcagaaaacttaaagaaccaaatt 45202696  T
Q  102 agcc 105  Q
    ||||    
T  45202697 agcc 45202700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 32450880 - 32450977
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 102  Q
    |||||||||||||| |  |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  32450880 attatttttctttactgtcctttatcaattatccttctttttagtttgtatttaatttgatgaaccaaatttaat-aaaaaatttaacgaaccaaatta 32450977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 11341647 - 11341723
Alignment:
Q  93 aaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttca 170  Q
    ||||||||||||| ||||||||||||||||||||||| |||| ||| ||||  |||||||||| ||||||||| ||||    
T  11341647 aaccaaattagcc-ccataaaatatttatggtcatgatttacaaagatttgtgttttcctttacggtgtttccgttca 11341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 26169891 - 26169764
Alignment:
Q  52 tatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcc 151  Q
    ||||||||||||||||||||||||||||| |||| ||||| |  |||||||  | | | ||||||||||| ||||||||||||||| ||||| | ||| |    
T  26169891 tatttaatttgatgaaccaaatttaatcaaaaaatttaacaattcaaattaatc-ctacaaaatatttatcgtcatgagttaccaaattttggaattttc 26169793  T
Q  152 tttatggtgtttcctttcaaaattactgt 180  Q
    |||| ||| | ||| |||| | |||||||    
T  26169792 tttacggtttctccgttcagatttactgt 26169764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 37371211 - 37371255
Alignment:
Q  7 atttttctttattaccctttatcaattctccttctttttgctttg 51  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||    
T  37371211 attttcctttattgccctttatcaattctccttctttttgctttg 37371255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 39857253 - 39857309
Alignment:
Q  92 gaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaatttt 149  Q
    |||||||||||||| | ||||||||||||||  ||||||||| ||||||||| |||||    
T  39857253 gaaccaaattagccac-ataaaatatttatgaacatgagttatcaagttttggatttt 39857309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 37821 - 37982
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  37821 cctattattttcctttattgccctttatcaattctccttctttttgttttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaa 37920  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    |||||||||  ||||| |||||||| | || ||||||| ||||||||||| ||||| |||||    
T  37921 ttagcctccgaaaaatgtttatggtaacgacttaccaaattttgaatttttctttacggtgt 37982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 91662 - 91816
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| |||||||  | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  91662 cctattattttcctttattgtcttttatcaattctccttctttttgctttgtaattaatttgatgaaccaaatttattcagaaaatttaacgaaccaaat 91761  T
Q  101 tagcctccataaaatatttatggtcatgagttaccaagttttgaattttccttta 155  Q
     |||| | | ||| | ||||||||||||| ||||||| ||||| |||||||||||    
T  91762 cagccccgaaaaagtgtttatggtcatgaattaccaaattttggattttccttta 91816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 20838467 - 20838345
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||| ||| ||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  20838467 cctattagtttcctttattgctctttatcaattcacattctttttgctttgtatttaatttgatgaaccaaatttaatcaaaaaacttaacgaactaaat 20838368  T
Q  101 tagcctccataaaatatttatgg 123  Q
    || ||||||||||||||||||||    
T  20838367 taacctccataaaatatttatgg 20838345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 27825128 - 27825304
Alignment:
Q  4 attatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaat-cagaaaacttaacgaaccaaatta 102  Q
    |||||||| |||||||   |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  27825128 attattttcctttattgttctttatcaattctccttctttttcgtttgtatttaatttgatgaaccaaatttaatccaaaaaatttaacgaaccaaatta 27825227  T
Q  103 gcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||  || |||||||||||||||| |||||||||||||||  ||||| ||||| ||| ||||| |||| | |||||||    
T  27825228 gcc-acaaaaaatatttatggtcaggagttaccaagttttagatttttctttacggtttttccgttcagatttactgt 27825304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 10683304 - 10683441
Alignment:
Q  22 cctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatattta 120  Q
    ||||||||||||||||||   ||||  ||||| ||||||||||||||||||||||||| |||||| ||||| |||||||||| || ||   |||| ||||    
T  10683304 cctttatcaattctcctt---tttgaattgtaatttaatttgatgaaccaaatttaattagaaaatttaacaaaccaaattaacccccgataaatgttta 10683400  T
Q  121 tggtcatgagttaccaagttttgaattttcctttatggtgt 161  Q
    |||| |||| ||||||| |||| |||||| ||||| |||||    
T  10683401 tggtaatgacttaccaaattttaaatttttctttacggtgt 10683441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 4146992 - 4147064
Alignment:
Q  67 accaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 140  Q
    |||||||||||||| |||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  4146992 accaaatttaatcaaaaaatttaacgaaccaaattagcc-ccataaaatatttacggacatgagttaccaagtt 4147064  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 30134273 - 30134401
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaat 100  Q
    ||||||||||| |||||||  |||| ||||||| |||||   |||| ||||||||||||||||| ||||||||||||||| |||| |||||  |||||||    
T  30134273 cctattattttcctttattgtccttcatcaattatcctt---tttg-tttgtatttaatttgataaaccaaatttaatcaaaaaagttaacataccaaat 30134368  T
Q  101 tagcctccataaaatatttatggtcatgagttac 134  Q
    ||||| | | |||||||| ||||| |||||||||    
T  30134369 tagcc-caagaaaatattgatggttatgagttac 30134401  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 365735 - 365801
Alignment:
Q  13 ctttattaccctttatcaattctccttctttttgctttgt-atttaatttgatgaaccaaatttaat 78  Q
    ||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  365735 ctttattgccttttatcaattctgcttctttttgctttgtaatttaatttgatgaaccaaatttaat 365801  T

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Target: scaffold0808 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 4216 - 4362
Alignment:
Q  1 cctattatttttctttattaccctttatcaattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaa 99  Q
    ||||||||||| ||||||| |||||||||||||||||||   ||||  ||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  4216 cctattattttcctttattgccctttatcaattctcctt---tttgaattgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaa 4312  T
Q  100 ttagcctccataaaatatttatggtcatgagttaccaagttttgaatttt 149  Q
    |||||| ||  ||||| ||||||||||||| ||||||| |||||||||||    
T  4313 ttagcccccgaaaaatgtttatggtcatgacttaccaaattttgaatttt 4362  T

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Target: scaffold0069 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 16960 - 17091
Alignment:
Q  24 tttatcaattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatgg 123  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||| | || ||||||||||||||||||||||| | | ||| | |||||||    
T  16960 tttatcaattctccttctttttgcgttgtaattaatttgatgaaccaaatttatttaggaaacttaacgaaccaaattagccccgaaaaagtgtttatgg 17059  T
Q  124 tcatgagttaccaagttttgaattttccttta 155  Q
    |||||||||||||| ||||| |||||||||||    
T  17060 tcatgagttaccaaattttggattttccttta 17091  T

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Target: scaffold0184 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 9665 - 9601
Alignment:
Q  2 ctattatttttctttattaccctttatcaattctccttctttttgctttgtatttaatttgatga 66  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  9665 ctattatttttctttattgccctttatcaattctccttctttttgcttcgtatttaatttcatga 9601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 9606 - 9550
Alignment:
Q  124 tcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 180  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||    
T  9606 tcatgagttaccaagttttgaatttttctttacggtgtttcctttcaagtttactgt 9550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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